Nelumbo nucifera (sacred lotus): 104611789
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Entry
104611789 CDS
T04131
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nnu
Nelumbo nucifera (sacred lotus)
Pathway
nnu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nnu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104611789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nnu03019
]
104611789
Messenger RNA biogenesis [BR:
nnu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104611789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
104611789
NCBI-ProteinID:
XP_010277307
UniProt:
A0A1U8B8A0
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All DBs
Position
Un
AA seq
944 aa
AA seq
DB search
MGVPAFYRWLADRYPLSISDVIEEEPSEDANGVLLPIDVSKPNPNDIEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEAEGRNLCAKEKPETSDLNVITPGTQFMVVLSVALQYYIQ
SRLNHNRGWWGTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVISFPGQQEKCFLCGQVGHLAAECRGKLGEEDGNSNEKVIDPTPIH
KKKYQFLNIWVLREYLQYDLEIPDAPFSINFERLVDDFVFICFFVGNDFLPHMPTLEIRE
GAINLLMYVYKREFTAMGGYLTDAGEVLLERVEHFIQSVAVYEDQIFQKRARIQQALENS
EEMKLKMKRENSEEPPSLTVDKVKLGEPGYKERYYIEKFDLSDPEKIDETRKDVVLKYVE
GLCWVMRYYYQGVCSWLWYYPYHYAPFASDIKDLADLEITFFLGKPFKPFDQLMGTLPAA
SSNALPEHYRALMTDPSSPISSFYPSDFQIDMNGKRFAWQGVAKLPFIDEQKLLAETEKL
ESTLTEEEKFRNQMMYDLLYVNSSHSLAGQIKYYLDYCYLCCNHMPLPRCPIDINASGGM
NGFLWLCERNGLRETIPYPIKGLQNIENNSVLDVTYINPERHRHIPEPPDGVIMPEKFLK
PYDIKPFPVLWHEDNGRRQQRPQVPRAISGPHLGEAAHRLVKNTLNVRGSNYTSSGWSEQ
TNHRNISGNHMVNRPRPAGPSGYENGFIQDPNYHGNYHHPRAVISSSRSAPSFNDIQGNR
QNFRMQDRSQYQDYSLRGAISALTIEEGSRARHHSGVPPRMPNSGYSQSPHQAYVQNATL
LPWPPTNWIDKPMMRNAGGYEKQQVKKIYQVRAQQRQETPDAGC
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggccttctaccgatggcttgcggatcggtaccctctctcgatctccgac
gtaattgaagaagagccgtcggaggacgcaaacggtgtgcttctaccaatcgacgtctcc
aaaccaaatcccaacgacattgaattcgacaacctttacttggacatgaacggcatcatt
catccttgctttcaccctgaaggaaagcctgcacctgccacatatgatgatgtatttaaa
tcaatatttgattacattgatcatctcttctcgttggttcgcccaagaaagcttctttat
atggcaatagatggggtcgcaccaagggctaaaatgaatcaacagcgttcaaggcgcttc
agagctgcaaaagatgctgctgaggcagaggctgaagaggaaagattgaggaaggagttt
gaggcagaggggagaaatctgtgtgctaaggagaagcctgaaacatctgatttgaatgtt
attactcctggaactcaatttatggttgtcttgtctgtagcgcttcaatattacatacag
tctaggctgaaccacaaccgagggtggtggggtaccaaggttattctttctgattccaat
gttcctggcgagggtgagcacaaaatcatgtcctacatccggttgcaacgcaatcttcct
ggttttgatccaaacacacgacattgtctgtatggcttggatgcagacttgattatgctg
tctcttgctactcatgaggttcacttctcaatattaagggaggtgatctcctttccaggg
caacaagagaaatgcttcctttgtggtcaagttggtcatctggcagctgagtgtcgtggc
aagcttggtgaagaagatggaaattcaaatgagaaggtcatagatcccacaccaattcac
aaaaagaaatatcagttcctcaacatctgggtgttgcgagaatatttacagtatgatttg
gagattccagacgctcctttttcaataaactttgaacgactagtggatgattttgttttt
atttgtttctttgttgggaatgactttcttccacatatgcccacattggaaatccgtgag
ggtgctataaatctactgatgtatgtctacaaaagggagtttactgccatgggtggctat
ctgacagatgcgggtgaggtattactggagagggtagaacattttattcagtctgttgca
gtgtatgaagatcagatctttcagaagcgggctcgaattcaacaggcactagagaatagt
gaagagatgaagcttaaaatgaagagagagaattctgaggagccaccaagtttgactgtg
gacaaggtgaaattaggggagcctggatataaagagaggtattacattgagaagttcgat
ttatcagacccagagaagattgatgaaactagaaaagatgttgtattgaagtatgtggaa
ggcctatgctgggtcatgcgatattactaccaaggtgtctgctcttggttatggtattat
ccatatcactatgctcccttcgcttccgacatcaaagatttggcggatctagaaattaca
ttctttttgggaaagccatttaagccttttgatcagctaatgggaaccttaccagctgcc
agttccaatgctctgcctgaacattacagagccttaatgactgatccatcttcgccaata
agttctttttatccttcagattttcagattgacatgaatggcaaacgctttgcgtggcag
ggtgttgcaaagttaccattcattgatgagcagaaattgcttgctgaaacagagaaactt
gagagtactttaacggaagaagaaaagtttcgaaatcagatgatgtatgatctgctctat
gtcaattcaagtcattctttggcaggacaaattaagtactacctcgactactgctaccta
tgctgcaatcatatgcccctgccacgttgcccaattgacataaatgccagtgggggtatg
aatggcttcctatggttatgtgagaggaatggactgagggaaaccattccttacccaatt
aagggtttgcagaacatcgagaataacagtgtcttagatgttacttatattaatcctgag
cggcatcgccacattccagaacctcccgatggtgtaatcatgcctgaaaagtttctaaag
ccttatgacataaaaccctttcctgtgttatggcatgaagataatggcaggcgtcagcaa
aggcctcaagttccacgtgcaatatctggccctcatttaggagaagcagcccatcgattg
gtcaagaatacacttaatgtcagaggcagcaattacacttcctcaggatggtcagaacaa
acaaatcaccgaaatatttcaggtaatcacatggtcaacagaccaaggccagctggacct
tcagggtatgaaaacggattcatccaggaccccaattaccacgggaattaccaccatcct
cgggctgtcattagtagctccagatcagcaccctccttcaacgacatacagggcaacaga
caaaatttcaggatgcaggacaggtcgcaatatcaagattatagcttaaggggtgcaata
tctgccttgacaattgaagaaggttcaagggctcgacaccattctggtgtgccaccaagg
atgccaaattctgggtactcacaaagtccacaccaggcatatgttcagaatgctactctg
cttccttggccacccactaattggattgataaaccaatgatgagaaatgctggaggttat
gagaaacagcaggtgaagaagatttatcaagtgagagcacaacagcgacaagaaacacca
gatgctgggtgctag
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