Neobacillus novalis: QNH39_02410
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Entry
QNH39_02410 CDS
T09082
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nnv
Neobacillus novalis
Pathway
nnv03030
DNA replication
nnv03410
Base excision repair
nnv03420
Nucleotide excision repair
nnv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNH39_02410 (ligA)
03410 Base excision repair
QNH39_02410 (ligA)
03420 Nucleotide excision repair
QNH39_02410 (ligA)
03430 Mismatch repair
QNH39_02410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nnv03032
]
QNH39_02410 (ligA)
03400 DNA repair and recombination proteins [BR:
nnv03400
]
QNH39_02410 (ligA)
Enzymes [BR:
nnv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNH39_02410 (ligA)
DNA replication proteins [BR:
nnv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNH39_02410 (ligA)
DNA repair and recombination proteins [BR:
nnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNH39_02410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNH39_02410 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNH39_02410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNH39_02410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
RNA_pol_A_CTD
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WHY86750
UniProt:
A0AA95MNM1
LinkDB
All DBs
Position
474125..476131
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQIAEQTINEIRSLLNQYGYEYYVLDKPSVPDAEYDKLMQELLELEEKFPELKTPDSP
SVRVGGAILALFEKVEHRTPMLSLGNAFNEQDLRDFDRRIRQAVGDNFSYVCELKIDGLA
VSLRYEDGLFVQGATRGDGTIGEDITANLKTIKSIPLRLLEPVSLEVRGEAFMPKRSFEA
LNQARTERGEDLFANPRNAAAGSLRQLDPKIAASRKLDVFLYGIGNPEAIGAVSHSDGLD
YLDHLGFKTNKERRKCASIDEVVQFVNDWVEKRQNLPYEIDGIVIKVDSLEQQDELGTTA
KSPRWAIAFKFPAEEVVTTLIDIELSVGRTGVITPTAILEPVKVAGTTVQRASLHNEDLI
REKDIKIGDKVVVKKAGDIIPEVVNVLADQRTGNEVDFKMPTHCPECESELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGERVISQLFAEKLISDVADIYKLTSEQLLAL
ERMGEKSVSNLIKAIEASKSNSLEKLLFGLGIRHVGAKAAKTLALNFDSMDKLAIASKDE
LIAINEIGDKMADSIVAFFEQDEAKELINELVAAGVNMAYKGVKPVSAAESDSIFAGKTV
VLTGKLELLSRNEAKEKIEALGGNVAGSVSKKTHLVVAGADAGSKLKKAEELGIEVWDEE
KLLEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaaatcgctgaacagacaatcaatgaaattagaagcctattgaatcaatat
ggctatgaatattatgtgttagacaaaccatctgtaccagatgcagaatatgacaagctc
atgcaggaactgctggagctggaagaaaagttcccggagctaaaaacgccagattctcct
tcagtccgtgttggaggagccattcttgcactttttgaaaaggttgagcaccgcaccccg
atgttaagccttgggaatgcctttaatgaacaggatttaagggactttgaccgccgcatc
cgtcaggcggtcggcgataacttttcctatgtatgtgagctgaaaattgacgggcttgct
gtttctttacggtatgaagacggtctatttgtccaaggcgctacccgcggggatggaacg
atcggtgaagatatcactgctaatctaaaaaccatcaaatcgattcccctgcgtttactg
gaacctgtttcgttagaggtccgcggcgaagcctttatgccgaagcgctcgtttgaagca
ttgaatcaggcacgaacggaacgcggcgaagatctgtttgccaatccgaggaacgccgct
gcgggatcactgagacagcttgacccaaagattgctgcttcgagaaaattagatgtcttc
ctatatggaattggcaatccagaagcaattggggcagtgtctcacagcgatggcctggat
tacttggatcatcttggttttaaaacgaataaagaacggcggaaatgtgcatctattgat
gaagtcgtccagtttgtaaatgactgggtcgaaaagcgccaaaatctcccttacgaaatt
gacgggattgtcatcaaagtcgattctttagagcagcaggatgagcttggtactacagca
aaaagtccgcgctgggcaattgcttttaaattcccggctgaagaagtagtgacaacacta
atagatatcgagttaagtgtcggcaggacaggggtcattactccgacggccattttagaa
cctgttaaggtagcgggaaccacagtacagcgggcttccttgcacaatgaggatttaatc
cgcgagaaggatattaaaattggcgataaagtcgtcgttaaaaaagcaggcgatatcatt
ccggaagtggtcaatgtgctggcagatcagcggacaggcaatgaagtggatttcaagatg
ccaacccattgtcccgagtgtgagagtgagcttgtacgtcttgaaggtgaagtggcactg
cgctgtattaaccctaaatgcccagcgcaaattcgcgaaggcttgattcactttgtctca
aggaacgcgatgaatatcgacggtcttggcgaaagggtcatcagtcagctgtttgccgaa
aaattaatcagcgatgttgctgatatttataaacttacaagtgaacagcttttagccctt
gaaagaatgggcgaaaaatcagtttctaatctaataaaagcgattgaagcctccaaaagc
aattcgcttgaaaagctattattcggtcttggtatccgtcatgtcggtgcgaaagcagca
aaaacgctggcgctcaactttgattcgatggataaacttgcgattgcttctaaggatgaa
ctaatcgcgattaacgaaatcggcgataaaatggctgattccattgttgccttctttgaa
caagatgaagcaaaggaactcatcaatgaattagttgctgccggggtaaatatggcgtat
aaaggagtcaaaccggtttcggccgcagaatcagattcgatttttgccggaaaaacagtg
gtccttacaggaaagcttgagctattatcgcgaaatgaagccaaggaaaagattgaagca
cttggcggcaatgtcgcaggcagtgtgagcaaaaaaacacatctcgtggttgccggtgct
gacgctggttcgaagttaaagaaagcagaagagctgggcattgaagtgtgggatgaggag
aagcttttagaagaattaaataaataa
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