Nonlabens sp. MB-3u-79: CW736_13920
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Entry
CW736_13920 CDS
T05253
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nob
Nonlabens sp. MB-3u-79
Pathway
nob03030
DNA replication
nob03410
Base excision repair
nob03420
Nucleotide excision repair
nob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CW736_13920
03410 Base excision repair
CW736_13920
03420 Nucleotide excision repair
CW736_13920
03430 Mismatch repair
CW736_13920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nob03032
]
CW736_13920
03400 DNA repair and recombination proteins [BR:
nob03400
]
CW736_13920
Enzymes [BR:
nob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CW736_13920
DNA replication proteins [BR:
nob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CW736_13920
DNA repair and recombination proteins [BR:
nob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CW736_13920
NER (nucleotide excision repair)
GGR (global genome repair) factors
CW736_13920
MMR (mismatch excision repair)
DNA ligase
CW736_13920
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CW736_13920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
DNA_ligase_A_M
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
AUC80407
LinkDB
All DBs
Position
complement(3170707..3172776)
Genome browser
AA seq
689 aa
AA seq
DB search
MSPKEQIQSLRIELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEATHPEFYDATSPSVR
VGGEVTKNFHTVKHINRMYSLDNSYSIEDLKDWETRIKKIVDGDIQFTCELKYDGASISL
HYENGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGDDVPAKFEIRGEIVLPWEGFHK
MNEEREAQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSLAGDDLPATTQSDSLEY
ARKWGFKAPKESKLVSSIEEVFEFINHWDVARRELPYETDGVVVKVNSLRQQEELGFTAK
SPKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEAVEISGTTVRRASLHNADQIE
RLDIRVGDEVYVEKGGEIIPKIVAVDLSKRPENSVPTIYATHCPECHTALVRNEGDAKHY
CPNEMACPPQVKGRIQHFISRKAMDIDGIGSETVDQLVEAGLIHNYADLYDLTVEQVLPL
ERMAQKSAENMVQGIEASKQVPFERVLFGLGIRYVGETVAKKLAKHYKNIEALLKIPAEP
EKDNLDLFADITSAADKKTEELTAVPEIGERIAQSVVAFITDPYQLDIVERLQASGLQLA
LSEEQLEGQTDKLVGKSFVISGVFEMSRNALKKLIEDNGGKVSSSLSSKTDYLVRGENMG
PSKLEKAEKLGINMLSELEFLEMVEGSNS
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagtccaaaagaacaaatacaatccttacgtatcgaattgcgtgagcacaattataac
tactacgttaatgataatcctaccatatcagactttgagtttgataagaaactggagcaa
ttaaaaacgctggaagccactcatcctgagttttatgacgcgactagtccatcggtacga
gtaggtggtgaagtgaccaaaaacttccatacggtaaagcatatcaatcgcatgtactcc
ctggataattcttattctatagaggatttaaaagattgggaaacccgcatcaaaaaaata
gttgatggcgatattcagttcacttgtgagttgaaatacgacggcgcgagtatttcctta
cattatgaaaacggaaaatttgtacaagcggttacccgtggcgatggaaatcaaggtgat
gaggtaacggctaatgtgcgtacgatcaagtcggttccattgcaattaaaaggagatgat
gtaccggccaaatttgaaatacgtggtgagattgtgttgccttgggaaggttttcataaa
atgaatgaagaacgggaggctcaaggactggatttatatcgcaacccgcgtaatacggct
agtggtagtttgaaattacaggacagtgctgaagtggccaaacgacctttagactgtctt
ttgtactcgcttgctggagatgatttacctgcaacaacacagtcagactctttagaatat
gctagaaaatggggttttaaagcacccaaggaatccaagttagtgagctctattgaagag
gtttttgagtttatcaatcactgggatgtggcaagaagggagttgccttatgaaacggat
ggggttgttgtaaaagtgaattcgttgcgtcagcaagaagagttgggttttacggctaaa
tcgcccaagtgggcgatggcatacaagtttgctgcagagcaagtttctacacggctagaa
gaaattacctatcaagtaggtcgcaccggttctataacaccggtagcaaatttagaagcg
gtggaaatctctggaacaaccgtaaggcgagcaagtttgcataatgctgaccaaattgaa
aggttggatatcagagtaggcgatgaggtatatgtagaaaaaggcggtgagatcattcct
aaaatcgtagcggtggatttatcaaaacgaccagaaaactcggttcctaccatttacgcc
acacattgtccagaatgtcatacagcattagtgcgcaatgaaggtgatgcaaaacattac
tgtccgaacgaaatggcatgtccgccacaagtaaaaggtcgcatacagcattttatatct
cgtaaagctatggatatagacggcatcggttctgaaacggtagaccagttagtagaagct
ggattgattcacaattatgccgatttatacgatttaactgtagaacaagtattgccattg
gagcgtatggcgcaaaaaagtgccgaaaatatggtccaaggaattgaagctagtaaacaa
gttccttttgagcgggtgttatttggtcttggaattagatatgtaggagaaacggtagct
aaaaaacttgccaaacattataaaaatatagaggcactgcttaaaatacctgcagagccg
gagaaggacaacttagatctttttgcagatattaccagcgcagctgataaaaaaacagaa
gaacttaccgctgtgccagagataggggagcgtattgctcagtctgtggtggcctttatt
actgatccataccaactagatattgtagaaagacttcaagcatcaggattgcaattggca
ctttctgaagaacaactagaaggtcagacagataagttagtggggaagagttttgtgatt
tcaggcgtttttgaaatgtctagaaacgctttgaaaaagcttattgaggacaacggtgga
aaagtaagtagttcgctttccagtaagacagattacttagttcgcggtgaaaatatgggg
ccgtctaaattagaaaaagcggagaaactagggataaatatgcttagtgagttggagttt
ttagaaatggttgaggggtcaaatagttaa
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