Nocardioides sp. JQ2195: ncot_05405
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Entry
ncot_05405 CDS
T10874
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
noca Nocardioides sp. JQ2195
Pathway
noca03030
DNA replication
noca03410
Base excision repair
noca03420
Nucleotide excision repair
noca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ncot_05405 (ligA)
03410 Base excision repair
ncot_05405 (ligA)
03420 Nucleotide excision repair
ncot_05405 (ligA)
03430 Mismatch repair
ncot_05405 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noca03032
]
ncot_05405 (ligA)
03400 DNA repair and recombination proteins [BR:
noca03400
]
ncot_05405 (ligA)
Enzymes [BR:
noca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ncot_05405 (ligA)
DNA replication proteins [BR:
noca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ncot_05405 (ligA)
DNA repair and recombination proteins [BR:
noca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ncot_05405 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ncot_05405 (ligA)
MMR (mismatch excision repair)
DNA ligase
ncot_05405 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ncot_05405 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
BRCT_2
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QIX26096
UniProt:
A0A6H0ZZ72
LinkDB
All DBs
Position
1128241..1130394
Genome browser
AA seq
717 aa
AA seq
DB search
MSSSEVTAATPEARERHRELSEQIEDARWRYYVLDDPTLSDADFDVRLRELEALEDEFPE
LRTPDSPTQKVGGAVSTEFTAVDHLERMESLDNAFSFEELSTWHSRLARDGVENPALLCE
LKVDGLAINLLYEKGRLVRALTRGDGRTGEDVTPNVKTISTIPHRLTGTDEFPVPDLVEV
RGEVFLPVEAFEQLNETMLDRGKPPFANPRNAAAGSLRQKNPKVTATRALGMVCHGIGAR
QGFTPTAQSQAYDALAAWGLPTSHRVKVLPDLASVEEFIELSGEHRHEVEHEIDGVVIKV
DDVTLQRRLGSTSRAPRWAIAYKYPPEEVNAKLISIEVNTGRTGRVTPFAVMEPTKVAGS
TVERATLHNGYEVARKDVRPGDTVILRKAGDVIPEIVGPVLALRPEGLAEWVMPTTCPAC
GTELVEQKEGDKDRRCPNHQKCPAQLLDRVFHVAGRGAFDIEGLGSEAAAALLDAGVVTD
EGDLFTLTEADLLKTTLFTRASKKDAHRDGAGAPPEEPRDRELSANGARFLANLDQAKQV
PLWRVLVALSIRHVGPTAARALATEFGSVEAIRGADEARLADVEGVGGTIAASVRRWFDD
EGSEWHNAIVDKWAAAGVTMEDERDDSVERTLEGLSIVVTGSLEKFSRDQAKEAILARGG
KAASSVSKKTAFAVIGEAAGSKADKAADLGIPILDEAGFEVLLEQGPEAAKKVADQG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttccgaggtcaccgccgcgacccccgaggctcgcgagcggcatcgcgagctg
tccgagcagatcgaggacgcccgctggcgttactacgtgctcgacgaccccacgctctcc
gacgccgacttcgacgtcaggctgcgggagctggaggcgctggaggacgagttccccgag
ctgcgcactcccgactcgccgacccagaaggtcggcggggcggtctccacggagttcacc
gcggtcgaccacctcgagcggatggagtccctggacaacgcgttctccttcgaggagctg
tccacctggcactcacggctggcccgcgacggcgtcgagaatcccgcgctgctgtgcgag
ctcaaggtcgacggcctggccatcaacctcctctacgagaaggggcggctggtccgtgcg
ctcacccgaggtgacgggcgcaccggtgaggacgtcacgcccaacgtgaagaccatctcc
accatcccgcaccgactcaccggcaccgacgagttcccggtgcccgacctggtcgaggtg
cgtggcgaggtcttcctgcccgtcgaggcgttcgagcagctcaacgagaccatgctcgat
cggggcaagccaccctttgcgaacccgcgcaacgcggccgccggctccctgcgccagaag
aaccccaaggtgaccgccacccgtgccctgggcatggtctgccacggcatcggagcgcgt
cagggcttcacgccgacggcccagtcccaggcgtacgacgccctggccgcgtggggcctg
cccacctcccaccgcgtcaaggtgctgcccgacctggcgtcggtcgaggagttcatcgag
ctcagcggtgagcaccgccacgaggtcgagcacgagatcgatggcgtggtgatcaaggtc
gacgacgtcaccctgcaacgtcgcctcggctccaccagccgggctccgaggtgggcgatc
gcctacaagtacccacccgaggaggtcaacgcgaagctgatctcgatcgaggtcaacacc
ggccgcaccggccgcgtgacgccgttcgcggtcatggagccgaccaaggtggccggctcc
accgtcgagcgggccaccctgcacaacggctacgaggtggcgcgcaaggacgtccgcccg
ggtgacaccgtgatcctgcgcaaggccggtgacgtgattcccgagatcgtcggcccggtg
ctcgcgttgcggcccgaagggctggccgagtgggtgatgccgacgacgtgcccggcctgc
ggcaccgagctggtcgagcagaaggagggcgacaaggaccgtcgttgccccaaccatcag
aagtgtcccgcgcagctgctcgaccgggtcttccacgtcgccggccggggagccttcgac
atcgagggcctcggctcggaggccgccgccgccctgctcgacgcgggcgtggtcaccgac
gagggcgacctcttcacgctcaccgaggccgacctgctgaagacgacgttgttcacccgg
gcgtccaagaaggacgcccatcgagacggcgctggcgcacctcctgaggagccgagagac
agggagctgtccgccaacggggcgcgcttcctggccaatctcgaccaggccaagcaggtg
cccctgtggcgcgtgctggtggcgttgtccatccgtcacgtcggcccgacggcggcccgc
gcgctggccaccgagttcggctcggtcgaggcgatccgcggcgcggacgaggcgcgactt
gccgacgtggagggggtgggcggcaccatcgctgcctccgtgcgccgatggttcgacgac
gaggggtcggagtggcacaacgccatcgtcgacaagtgggccgctgcgggcgtgaccatg
gaggacgagcgtgacgactccgtcgagcgcaccctggagggtctctccatcgtggtcacc
gggtcgctggagaagttcagtcgcgaccaggccaaggaggcgatcctggcgcgcggcggc
aaggccgcctcgtccgtgtcgaagaagaccgcctttgcggtgatcggtgaggccgccggg
tccaaggccgacaaggccgctgacctcggcatcccgatcctcgacgaagccggcttcgag
gtgctgctggagcagggccccgaggcggccaagaaggttgccgaccagggctga
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