Nocardioides sp. L-11A: QJ852_08890
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Entry
QJ852_08890 CDS
T10892
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nocd Nocardioides sp. L-11A
Pathway
nocd03030
DNA replication
nocd03410
Base excision repair
nocd03420
Nucleotide excision repair
nocd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nocd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QJ852_08890 (ligA)
03410 Base excision repair
QJ852_08890 (ligA)
03420 Nucleotide excision repair
QJ852_08890 (ligA)
03430 Mismatch repair
QJ852_08890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocd03032
]
QJ852_08890 (ligA)
03400 DNA repair and recombination proteins [BR:
nocd03400
]
QJ852_08890 (ligA)
Enzymes [BR:
nocd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QJ852_08890 (ligA)
DNA replication proteins [BR:
nocd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QJ852_08890 (ligA)
DNA repair and recombination proteins [BR:
nocd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QJ852_08890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QJ852_08890 (ligA)
MMR (mismatch excision repair)
DNA ligase
QJ852_08890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QJ852_08890 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WGX98552
LinkDB
All DBs
Position
1904363..1906483
Genome browser
AA seq
706 aa
AA seq
DB search
MTQADLPVVPPSARDEHATLVDEVEEARWRYYVLDQPTLSDADFDARMRRLEELEEQYGE
LRTPDSPTQKVGGAVSTEFTAVDHLQRMESLDNAFSFEELAAWHARLGRDGITDAALLCE
LKVDGLAINILYEKGRLVRALTRGDGRTGEDVTPNVKTIASVPHRLTGTDEFPVPALVEV
RGEVFLPAEAFEALNVTMTEAGKPAFANPRNAAAGSLRQKDPRVTATRALGMVCHGIGAR
EGFEPRAQSQAYEALAAWGLPVSEQVRVLPTLAEVQGYIEHAGENRHSIVPYEIDGVVVK
VDDVALQRRLGSTSRAPRWAIAYKYPPEEVNTKLLDIAVNVGRTGRVTPYGVMEPTKVAG
STVENATLHNFHEVERKDVRPGDTVILRKAGDVIPEIVGPVLPLRPDGLEPWVAPTTCPA
CATELVEQKEGDKDRRCPNHERCPGQVRERVFFVASRNAFDIEGLGYEAAVALLDAGVIT
NEGDVFDLDADRLRATGLFTRAPKKDEDGPQLSANGEKLLANLDARKDVALWRVIVALSI
RHTGPSASRALAQEFGSMAAIREATEEQLAAAEGVGPTIAAAVIEWFQVPWHVAIVDKWT
AAGVSMADERDESVARTLEGLTVVVTGSLVDFSRDSAKEAILSRGGKAAGSVSKKTDFVV
VGENAGSKAEKAEALGVPVLDEDGFKALLENGPPAEVAGEDTGEEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggccgacctccccgtcgtaccgccctcggcccgcgacgagcacgcgacgctc
gtcgacgaggtggaggaggcccgctggcgctactacgtgctcgaccagccgacgctgtcc
gacgccgacttcgacgcccggatgcgacgcctggaagagctcgaggagcagtacggcgag
ctgcggacgccggactcgccgacccagaaggtcggcggcgcggtgtcgacggagttcacc
gcggtcgaccacctccagcggatggagagcctcgacaacgccttctccttcgaggagctg
gccgcctggcacgcccggctgggccgcgacgggatcaccgacgctgcgctgctgtgcgag
ctcaaggtcgacgggctggcgatcaacatcctctacgagaaggggcggctggtccgggcg
ctgacccgcggcgacgggcgcaccggcgaggacgtgacgcccaatgtgaagaccatcgcg
tcggtgccgcaccggctgaccggcaccgatgagttcccggtgccggcgctggtcgaggtg
cgcggcgaggtgttcttgccggccgaggcgttcgaggcgctcaacgtgacgatgaccgag
gcgggcaagccggccttcgccaacccccgcaacgccgccgccggctcgctgcggcagaag
gacccgcgggtcaccgccacccgcgcgctcggcatggtctgccacggcatcggcgcacgc
gagggcttcgagccgcgcgcgcagtcccaggcctacgaggcgctggccgcctggggcctg
cccgtgtcggagcaggtgcgggtgctgccgaccctcgccgaggtccagggctacatcgag
cacgccggcgagaaccggcactcgatcgtgccctacgagatcgacggcgtcgtggtgaag
gtcgacgacgtcgccctgcagcgccggctgggctccacgagccgggcgccccgctgggcg
atcgcctacaagtacccgccggaggaggtcaacaccaagctgctggacatcgcggtcaac
gtcggccgcaccggccgcgtcacgccgtacggcgtcatggagccgaccaaggtcgccggc
tcgacggtggagaacgccacgctgcacaacttccacgaggtcgagcgcaaggacgtgcgg
ccgggggacaccgtcatcctgcgcaaggccggcgacgtgatccccgagatcgtcggcccg
gtgctgccgttgcggcccgacgggctcgagccgtgggtggcgccgacgacctgccccgcg
tgcgccaccgagctggtcgagcagaaggagggcgacaaggaccggcgctgtcccaaccac
gagaggtgcccgggccaggtgcgcgagcgggtgttcttcgtcgcgagccgcaacgccttc
gacatcgaggggctgggctacgaggccgcggtcgcgctgctcgacgctggcgtgatcacc
aacgagggcgacgtgttcgacctcgacgccgaccggctgcgcgccaccggcctgttcacc
cgcgcgccgaagaaggacgaggacggcccgcagctcagtgccaacggggagaagctgctc
gccaacctcgacgcccgcaaggacgtcgcgctgtggcgggtcatcgtcgcgctctcgatc
cggcacaccgggcccagcgcctcgcgtgcgctcgcccaggagttcggctcgatggccgcc
atccgggaggccaccgaggaacagctcgccgctgccgagggcgtcgggcccaccatcgcc
gcagcggtgatcgagtggttccaggtgccctggcacgtggcgatcgtggacaagtggacc
gccgccggggtgtccatggccgatgagcgcgacgagtccgtcgcccgcaccctcgagggc
ctcaccgtcgtcgtcacgggctcgctggtcgacttctcccgcgactcggccaaggaggcc
atcctgtcccgcggcggcaaggccgccgggtcggtgtcgaagaagaccgacttcgtcgtt
gtcggcgagaacgccggctccaaggccgagaaggccgaggcgctcggcgttccggtgctc
gacgaggacgggttcaaggcgctgctcgagaacggcccgcccgctgaggtcgccggcgag
gacaccggcgaggaggagtga
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