Nocardioides sp. Arc9.136: OSR43_06695
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Entry
OSR43_06695 CDS
T10603
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nocr Nocardioides sp. Arc9.136
Pathway
nocr03030
DNA replication
nocr03410
Base excision repair
nocr03420
Nucleotide excision repair
nocr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nocr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OSR43_06695 (ligA)
03410 Base excision repair
OSR43_06695 (ligA)
03420 Nucleotide excision repair
OSR43_06695 (ligA)
03430 Mismatch repair
OSR43_06695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocr03032
]
OSR43_06695 (ligA)
03400 DNA repair and recombination proteins [BR:
nocr03400
]
OSR43_06695 (ligA)
Enzymes [BR:
nocr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OSR43_06695 (ligA)
DNA replication proteins [BR:
nocr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OSR43_06695 (ligA)
DNA repair and recombination proteins [BR:
nocr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OSR43_06695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OSR43_06695 (ligA)
MMR (mismatch excision repair)
DNA ligase
OSR43_06695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OSR43_06695 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Auto_anti-p27
Prot_ATP_ID_OB_C
BRCT_2
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
WKN49810
LinkDB
All DBs
Position
1381792..1383957
Genome browser
AA seq
721 aa
AA seq
DB search
MTDPTPASEDAREEHRRLAEEVEDARWRYYVLDAPSLSDADFDRRMRRLEELEEANPELR
TPDSPTQKVGGAVSTDFTAVDHLQRMESLDNAFSFEELEAWYGRLRRDGVEDPALLCELK
VDGLAINLLYEDGRLVRALTRGDGRTGEDVTPNVKTIDSVPHRLTGTDEHPVPRLVEVRG
EVFLPVEAFERLNEAMTDAGKPVFANPRNAAAGSLRQKDPRVTATRALGMVCHGIGKREG
FEPRAQSAAYDALRAWGLPTSDRARVVESLAEAQEFIEHYGEHRHDVEHEIDGVVLKVDD
VGQQRRLGSTSRAPRWAIAFKYPPEEVNTLLHAIEVQVGRTGRVSPFGRMEPTRVAGSTV
EKATLHNAHEVKRKDVRPGDTVVLRKAGDVIPEIVGPVLALRPEGLPEWVMPTECPACGT
PLYQQKEGDRDLRCPNHRSCPAQARERVFHVAGRGAFDIEGLGYEAATALLDAGVIANEG
DVFDITAEGLLRAPLFTRAPKKDEGDGPVLNANGQRLLANLGDRKQVPLWRVLVALSIRH
VGPTAARALAQEFGSMERIRAASEAELAAAEGVGPTIAEAVIEWFSVDWHADIVEKWTAA
GVAMADERDESTPRTLEGLSVVVTGSLEGFSRDEAKEAILARGGKAAGSVSKKTDFVVVG
ENAGSKADKAEQLGVPVLDEDGFRALLEGGADAVRPAVAGDGAGEDTGEDAGNGTGADAE
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgaccccggcgagcgaggacgcacgcgaggagcaccgacggctggccgag
gaggtcgaggacgcccgctggcgctactacgtgctcgacgccccctcgctctccgacgcc
gacttcgaccggcggatgcgcaggctcgaggagctcgaggaggcgaaccccgagctccgc
acgcccgacagcccgacccagaaggtcgggggagccgtgtccaccgacttcacggcggtg
gaccacctccagcgcatggagagcctggacaacgccttctccttcgaggagctggaggcg
tggtacggccggctgcgccgcgacggcgtggaggacccggcactgctctgcgagctcaag
gtcgacgggctcgccatcaacctgctctacgaggacggccggctcgtccgcgcgttgacc
cggggggacggccgcaccggcgaggacgtcacgccgaacgtcaagaccatcgactccgtc
ccgcaccggctcaccggtaccgacgagcacccggtcccgcggctggtcgaggtgcggggc
gaggtgttcctcccggtcgaggcgttcgagcggctcaacgaggcgatgaccgacgccggg
aagccggtcttcgccaacccgcgcaacgccgccgccggctcgctgcggcagaaggacccc
cgcgtcacggccacgcgcgcgctcggcatggtctgccacggcatcggcaagcgcgagggc
ttcgagccgcgcgcccagtccgcggcgtacgacgcgctgcgggcgtggggcctgccgacc
tccgaccgggcccgggtggtggagtccctcgccgaggcgcaggagttcatcgagcactac
ggcgagcaccgccacgacgtcgagcacgagatcgacggcgtcgtgctcaaggtcgacgac
gtcggccagcagcggcggctcgggtcgaccagccgggctccccggtgggcgatcgcgttc
aagtacccgccggaggaggtcaacaccctgctccacgcgatcgaggttcaggtcggccgc
accggtcgggtctcgccgttcgggcggatggagccgacccgcgtggccggctcgacggtc
gagaaggccaccctccacaacgcccacgaggtgaagcgcaaggacgtgcgccccggcgac
accgtcgtcctgcgcaaggccggcgacgtgatccccgagatcgtcggcccggtcctggcg
ctgcggcccgagggcctgccggagtgggtgatgccgaccgagtgccccgcctgcgggacc
ccgctgtaccagcagaaggagggcgaccgggacctgcgctgccccaaccaccggtcctgc
cccgcgcaggcccgggagcgggtcttccacgtcgccggccgcggcgccttcgacatcgag
ggcctgggctacgaggcggccaccgccctgctcgacgccggcgtgatcgccaacgagggc
gacgtcttcgacatcaccgccgaggggctgctgcgggcgccgctgttcacccgtgcgccg
aagaaggacgagggcgacgggccggtgctcaacgccaacggccagcggctcctcgccaac
ctcggcgaccgcaagcaggtgccgctgtggcgggtgctggtcgcgctgtcgatccgccac
gtggggccgaccgccgcgcgcgcgctggcccaggagttcggctcgatggagcggatccgg
gcggccagcgaggccgagctggccgctgccgagggcgtcggcccgaccatcgcggaggcg
gtgatcgagtggttctcggtcgactggcacgccgacatcgtcgagaagtggacggccgcc
ggcgtcgccatggccgacgagcgcgacgagtccacgccccgcacgctggaggggctctcg
gtcgtggtcaccggctccctcgagggcttcagccgcgacgaggccaaggaggcgatcctc
gcccgcggcggcaaggccgcgggctcggtgtcgaagaagaccgacttcgtggtggtgggc
gagaacgccgggtccaaggccgacaaggccgagcagctcggcgtgccggtcctcgacgag
gacggcttccgtgcgctgctcgagggtggcgcggacgccgtgcgcccggcggtcgccggg
gacggggccggggaggacaccggggaggacgccggaaatggcaccggggcggacgccgag
gcctga
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