Nocardioides sp. WV_118_6: ABFU82_12250
Help
Entry
ABFU82_12250 CDS
T10638
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nocw Nocardioides sp. WV_118_6
Pathway
nocw03030
DNA replication
nocw03410
Base excision repair
nocw03420
Nucleotide excision repair
nocw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nocw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABFU82_12250 (ligA)
03410 Base excision repair
ABFU82_12250 (ligA)
03420 Nucleotide excision repair
ABFU82_12250 (ligA)
03430 Mismatch repair
ABFU82_12250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nocw03032
]
ABFU82_12250 (ligA)
03400 DNA repair and recombination proteins [BR:
nocw03400
]
ABFU82_12250 (ligA)
Enzymes [BR:
nocw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABFU82_12250 (ligA)
DNA replication proteins [BR:
nocw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABFU82_12250 (ligA)
DNA repair and recombination proteins [BR:
nocw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABFU82_12250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABFU82_12250 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABFU82_12250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABFU82_12250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Auto_anti-p27
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XBB70042
LinkDB
All DBs
Position
complement(2536845..2538956)
Genome browser
AA seq
703 aa
AA seq
DB search
MSDAADLPVVPPEAREEHATITDEIEEARWRYYVLDDPTLSDADFDARMRRLEELEEQYA
ELRTPDSPTQKVGGAVSTEFTAVDHLQRMESLDNAFSYEELGAWYARLGRDGISEPALLC
ELKVDGLAINLLYEQGRLVRALTRGDGRTGEDVTPNVKTIASVPHRLSGTDEFPVPALVE
VRGEVFLPVEAFEALNVAMTEAGKPAFANPRNAAAGSLRQKDPRVTATRALGMVCHGIGA
REGFEPSAQSEAYRALAAWGLPVSEQVKVLPALADVEGYIANAGEKRHSLVPYEIDGVVV
KVDEVALQRRLGSTSRAPRWAIAYKYPPEEVNTELLGIEVNTGRTGRVTPYGVMRPVKVA
GSTVEMATLHNGYEVARKDVRPGDTVILRKAGDVIPEIVGPVLALRPEGLPAWVMPTECP
SCGTTLVEQKEGDKDRRCPNHEHCPAQVRERVFHVAGRGAFDIEGLGYEAAVALLESGAI
TNEGDIFSLTEDQLRSTALFTRAPKKDEEGLQLSANGRKLLDNLGERKAKVPLWRVLVAL
SIRHVGPTAARALATEFGSMTAIREATEEALAAAEGVGPTIAAAVIEWFGVPWHTAIVDA
WERDGVAMADERDESVARTLEGLTIVVTGSLEEFSRDSAKEAILSRGGKAAGSVSKKTDY
VVVGENAGSKAEKAEQLGVRVLTEDLFKVLLDQGPEGLPPEAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgccgccgacctccccgtcgtaccgcccgaggcccgggaggagcacgccacg
atcaccgacgagatcgaggaggcgcgctggcgctactacgtcctcgacgacccgacgctc
tccgacgccgacttcgacgcgcggatgcggcggctcgaggagctcgaggagcagtacgcc
gagctgcgcacccccgactcgccgacccagaaggtcgggggcgcggtgtcgacggagttc
accgcggtcgaccacctgcagcggatggagagcctcgacaacgccttctcctacgaggag
ctgggggcctggtacgcccggctcggccgggacgggatcagcgagccggcgctgctgtgc
gagctcaaggtcgacggcctggcgatcaacctgctctacgagcagggccggctggtgcgg
gcgctgacccgcggcgacgggcgcaccggcgaggacgtgacccccaacgtcaagacgatc
gcctcggtgccgcaccggctgagcgggaccgacgagttcccggtgccggcgctggtcgag
gtgcgcggcgaggtgttcctgcccgtcgaggccttcgaggcgctcaacgtggcgatgacc
gaggccggcaagcccgccttcgccaacccgcgcaacgccgcggccggctcgctgcgccag
aaggacccgcgggtcaccgcgacccgcgccctcggcatggtctgtcacggcatcggcgcg
cgcgagggcttcgagccgagcgcgcagtccgaggcctaccgcgccctcgcggcctgggga
ctgcccgtctccgagcaggtcaaggtgctgccggcgctggccgacgtcgagggctacatc
gccaacgcgggcgagaagcggcacagcctggtgccctacgagatcgacggtgtcgtggtc
aaggtcgacgaggtcgcgctgcagcgccggctcggctcgaccagccgggcgccgcgctgg
gcgatcgcctacaagtacccgcccgaggaggtcaacaccgagctgctcggcatcgaggtc
aacaccgggcgcaccggccgggtgacgccgtacggcgtgatgcggccggtcaaggtggcc
ggctccacggtcgagatggccacgctgcacaacggctacgaggtggcccgcaaggacgtc
cgccccggtgacaccgtgatcctgcgcaaggccggcgacgtcatccccgagatcgtcggg
ccggtgctcgcgctgcgccccgagggcctgccggcctgggtgatgccgaccgagtgcccc
tcctgcggcacgaccctggtcgagcagaaggagggcgacaaggaccgccgctgccccaac
cacgagcactgcccggcccaggtgcgcgagcgggtcttccacgtcgccgggcgcggtgcc
ttcgacatcgagggcctcgggtacgaggcggccgtcgcgctgctcgagtcgggcgcgatc
accaacgagggcgacatcttctcgctcaccgaggaccagctgcgctccaccgcgctcttc
acccgcgcgcccaagaaggacgaggagggcctccagctctcggccaacggccgcaagctc
ctcgacaacctcggcgagcgcaaggccaaggtcccgctctggcgggtgctcgtggcgctc
tcgatccgccacgtcggccccaccgcggcccgcgcgctggccaccgagttcggctcgatg
accgcgatccgcgaggccactgaggaggcgctcgccgccgccgagggcgtcggcccgacc
atcgccgccgcggtcatcgagtggttcggtgtcccgtggcacaccgcgatcgtcgacgcg
tgggagcgcgacggagtggcgatggccgacgagcgcgacgagtccgtggcccgcacgctc
gagggcctcaccatcgtggtcaccggctcgctcgaggagttctcccgggactcggccaag
gaggcgatcctgtcgcgcggcggcaaggccgcggggtcggtgtcgaagaagaccgactac
gtcgtggtcggcgagaacgccgggtccaaggccgagaaggccgagcagctcggcgtccgg
gtgctgaccgaggacctcttcaaggtgctgctcgaccaggggccggagggtctgccgccc
gaggcagaatga
DBGET
integrated database retrieval system
