Nocardia otitidiscaviarum: FOH10_22010
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Entry
FOH10_22010 CDS
T06114
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nod
Nocardia otitidiscaviarum
Pathway
nod03030
DNA replication
nod03410
Base excision repair
nod03420
Nucleotide excision repair
nod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOH10_22010 (ligA)
03410 Base excision repair
FOH10_22010 (ligA)
03420 Nucleotide excision repair
FOH10_22010 (ligA)
03430 Mismatch repair
FOH10_22010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nod03032
]
FOH10_22010 (ligA)
03400 DNA repair and recombination proteins [BR:
nod03400
]
FOH10_22010 (ligA)
Enzymes [BR:
nod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOH10_22010 (ligA)
DNA replication proteins [BR:
nod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOH10_22010 (ligA)
DNA repair and recombination proteins [BR:
nod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOH10_22010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOH10_22010 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOH10_22010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOH10_22010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
DUF7575
Motif
Other DBs
NCBI-ProteinID:
QDP80993
UniProt:
A0A516NQ31
LinkDB
All DBs
Position
complement(4910644..4912725)
Genome browser
AA seq
693 aa
AA seq
DB search
MSESGIEITPASGDERVEWQRLAEEVRDHQFRYYVRDAPIISDGEFDKLFQRLEALEEAH
PDLRTPDSPTQLVGGGFTTEFAPVDHLERMYSLDNVFNDEEMRQWIGRVEAETGPDIQYV
CEVKIDGVALNLVYEDGRLVRGATRGDGRTGEDVTLNARTIDDIPHVLTPSDEFPVPKLL
EVRGEAYMTLEDFAQLNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICHGFG
RLDGWAPESQHEAYRALSAWGLPVSAHTVLVRGADAVLERVAYWGEHRHDIEHEIDGQVV
KVDEFALQRRLGATSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTPFAVMEPVTVA
GSTVAMATLHNAAEVQRKGVLIGDTVTIRKAGDVIPEVLGPVVDMRDGSEREFVMPTRCP
ECGTELAPEKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEALGYEAAIDLLESGAI
ADEGDLFDLDEDKLLTTKLFTNKSGTLSANGRKLLDNLEAAKDRPLWRVLVGLSIRHVGP
TAARALASEFWSIDRIDAATVEELAATDGVGPTIAAAVAEWFTVDWHRAIVDKWRAAGVR
MEDERDESIERTLEGLSIVVTGSLQGFTRDGAKEAIIVRGGKAASSVSKKTAFVVIGDAP
GSKAAKAEELGVPILDEEGFLRLLERGPDGVEG
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgaatcgggaatcgagatcaccccggcgagcggggacgagcgcgtggagtggcag
cgactggcggaggaggttcgcgaccatcagttccgctattacgtgcgggacgcgccgatc
atctcggatggggagttcgacaagctgttccagcgactcgaggcgctggaggaggcgcat
ccggatctgcggacgccggactcgccgacgcagctggtgggcgggggattcaccaccgaa
ttcgcgccggtggaccatctggagcgaatgtactcgctggacaatgtgttcaacgacgag
gagatgcggcagtggatcggccgggtggaggccgagaccggacccgatatccagtacgtg
tgcgaggtcaagatcgacggcgtcgcactcaatctggtgtacgaggacgggcggctggtc
cgcggcgcgacccggggtgacggacgcaccggggaggacgtcacgctcaacgcgcgcacc
atcgacgacatcccgcacgtgctcacgcccagcgacgaattcccggtgccgaaactgctc
gaggtgcgcggcgaggcgtatatgacgcttgaggacttcgctcagctcaatgccgccatc
gtggcggaaggcaaaccgccgtacgcgaatccgcgcaataccgcggccggatcgctgcgg
cagaaggatccggcggtgaccgcgcggcggcgactgcgcatgatctgccacggcttcggc
cgcctggacggctgggcgccggaatcgcagcacgaggcgtatcgggcgctgtccgcctgg
ggcctgccggtctccgcgcacaccgtgctggtgcggggtgccgacgcggtgctcgagcgc
gtcgcgtactggggtgagcaccgccacgatatcgagcacgagatcgacggccaggtcgtc
aaggtcgacgaattcgcgctgcaacgtcgcctcggcgcgacctcgcgggccccgcgctgg
gccatcgcgtacaagtacccgcccgaggaggccaccaccaaactgctggacatccaggtg
aatgtgggccgcaccggccgcgtcaccccgttcgcggtcatggagccggtgacggtcgcg
ggctccaccgtcgccatggccaccctgcacaatgccgccgaggtgcagcgcaagggtgtg
ctcatcggcgacaccgtcacgatccgcaaggccggtgacgtgatccccgaggtgctcggt
ccggtggtggatatgcgggacggcagcgaacgcgaattcgtcatgcccacccggtgtccg
gagtgcggcaccgaactcgcccccgagaaggagggcgacgccgatatccgctgccccaac
cagcagtattgtccggcgcagttgcgggagcgggtcttccacgtggccggacgcggcgcg
ttcgatatcgaggcgctcggctacgaggccgccatcgacctgctcgaatccggcgccatc
gccgacgagggtgacctgttcgacctcgacgaggacaagctgctcaccaccaaactgttc
accaacaagagcggcacgctctcggcgaacggcaggaagctgctcgacaatctggaggcc
gccaaggaccgcccgctgtggcgggtgctggtgggcctgtccatccggcatgtcggaccg
accgccgcgcgggcgctcgcctcggaattctggagcatcgatcgcatcgacgccgccacc
gtcgaggaactcgccgccaccgacggtgtcggaccgaccatcgccgccgcggtggcggag
tggttcaccgtcgactggcatcgggccatcgtcgacaaatggcgggccgcgggcgtgcgc
atggaggatgagcgcgacgagtccatcgagcgcactctcgaggggctgtcgatcgtggtg
accggttcgctgcaagggttcacccgcgacggcgccaaggaggcgatcatcgtgcgcggc
ggcaaggcggccagttcggtgtcgaagaagaccgccttcgtcgtcatcggcgacgcgccc
ggctcgaaggcggccaaggccgaggagctgggggtgcccatcctcgacgaggaggggttt
ctccggctcctggagcgtggccccgacggcgtcgaagggtga
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integrated database retrieval system
