Nostoc sp. CENA543: CLI64_05100
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Entry
CLI64_05100 CDS
T05285
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
noe
Nostoc sp. CENA543
Pathway
noe03030
DNA replication
noe03410
Base excision repair
noe03420
Nucleotide excision repair
noe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLI64_05100 (ligA)
03410 Base excision repair
CLI64_05100 (ligA)
03420 Nucleotide excision repair
CLI64_05100 (ligA)
03430 Mismatch repair
CLI64_05100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noe03032
]
CLI64_05100 (ligA)
03400 DNA repair and recombination proteins [BR:
noe03400
]
CLI64_05100 (ligA)
Enzymes [BR:
noe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CLI64_05100 (ligA)
DNA replication proteins [BR:
noe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CLI64_05100 (ligA)
DNA repair and recombination proteins [BR:
noe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CLI64_05100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLI64_05100 (ligA)
MMR (mismatch excision repair)
DNA ligase
CLI64_05100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLI64_05100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
TP_methylase
Motif
Other DBs
NCBI-ProteinID:
AUS99819
UniProt:
A0A2I8A378
LinkDB
All DBs
Position
1246622..1248658
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AA seq
678 aa
AA seq
DB search
MSQIQSEVSRAQELRQLLQKASYAYYVLDAPIMEDAVYDQLYRELQQLEIQYPELITADS
PTQRVGERPATHFTSVRHNVPLYSLENAFNIDELQAWNQRWHRQVSPTEPPEYVAELKID
GSALALTYHNGVLVRGATRGDGEMGEDITQNVRTIRSIPLRLNFDGLEVIEKIEVRGEAF
LPLEVFQQINEQRQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHIPGRDDA
SIANTQWEALELLQKLGFRVNPNHKLCQSLADVADYYKYWDTERLNLPYMTDGVVVKLNS
YKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVELAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLKELRPPDTQPFIMPTHCPVCGQ
SVVRETGEAVTRCVNASCAAILKGSIEHWVSRDALDIKGVGEKLVHQLVDKVIVHSVADL
YDLTTEQLLVLERMGQKSAEKLIGAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKYRT
VEQLASAKQSDIEGIYGIGAEIAQSVYQWFRIDANQNLITRLQTAGLQFANIEETPIINN
ANLKLAGKTFVVTGTLPTLKRDEAKALIQKSGGKVTDSVSKKTDYLVVGEDAGSKLEKAQ
ALGIAQLTEAQLLEILEN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaattcaatcagaagtcagtcgcgctcaagaactgcgccaattattgcaaaaa
gctagttacgcttattatgtcttagatgcgcctattatggaggatgccgtctatgaccag
ttataccgagaactgcaacagttagaaattcaatacccagaactcattacagcagatagt
ccgactcagcgcgtcggggaacgacctgctacacattttacctctgtacgccacaatgtg
ccgttgtacagtctagagaatgcttttaatattgacgaattgcaagcatggaatcaacgt
tggcatagacaagtatcgcctacagagccgcctgaatatgtagctgaattaaaaattgat
ggttcagctctggctttaacttaccacaatggcgttttagttaggggtgcaactaggggt
gatggagaaatgggagaagatatcacccaaaatgtgcggacaattcgttccattccctta
cggttaaattttgatggcttagaagtaatcgagaaaatcgaagtgcggggggaagcgttt
ttacctttagaagtgttccaacaaattaacgaacaacgccaaaaagcaggagaacagtta
tttgccaatccccgtaatgcggcggctggtacactgagacaattagactctcgcattgtg
gcacggagaagattagatttttttgcttatacactgcacattccggggagagatgacgca
agtattgcaaacacccaatgggaagcgttggaattgctgcaaaaattgggttttcgggta
aatcccaatcacaaactttgccaatctctcgctgacgttgcagattactataaatattgg
gatacagaaagattaaatctcccctacatgaccgatggggtggtagtcaagttaaattcc
tataagttgcaagaacagttaggatttacccaaaagtttccccgatgggcggtagcctta
aagtaccccgccgaagaagcacccacccgtgtagaaaatattgctgtgaatgtaggacgc
acaggcgcgttaacaccattagcagaaatgcgtcccgtggaattagcaggaactaccgta
tctcgtgctaccttacataatagcgatcgcattgcccaattagatatccgcatcggtgat
actgtgattgttcgcaaagccggggaaatcatccccgaagtggtgcgggtactcaaagaa
ctacgtcccccagatactcaaccctttattatgcctacccattgtcccgtttgcggacag
tctgtggtgagggaaacaggggaagctgtaacgcgctgtgtgaatgcttcctgtgcggct
attctcaaaggttcaattgaacattgggtaagtcgcgatgctttagatattaaaggtgtg
ggagaaaaattagtccatcaactcgtagataaagtaatagtacattccgttgctgattta
tatgatttgacaacagaacaattattagtattggaaagaatgggacaaaaatcagccgaa
aaattaattggggcgatcgcacagtcaaaaaatcagccgtggtcaagggtattatatggt
ttaggtattcgtcacgtcggcagcgtcaatgctcaattactcacagaaaaataccgcaca
gtagaacagttagcctcagccaaacaatcagatattgagggtatctatggtataggtgca
gaaatcgcccagtctgtttatcaatggtttcgtattgatgccaatcaaaatttaattact
cggttgcaaacagccgggttacaatttgctaacatcgaagaaacaccaattattaacaat
gctaacctcaagctagcgggtaagacttttgtcgtgacaggaactttgcccacgttaaag
cgcgatgaagcaaaagctttaattcaaaaatctggtggtaaagtgacagattcagtgagc
aaaaaaactgactatttagttgtgggtgaggacgcaggttctaaattagaaaaagcccaa
gccttgggaattgcacaattaactgaggcgcagctattagagattttagaaaattaa
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