Nordella sp. HKS 07: G5V57_32080
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Entry
G5V57_32080 CDS
T06462
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
noh
Nordella sp. HKS 07
Pathway
noh03030
DNA replication
noh03410
Base excision repair
noh03420
Nucleotide excision repair
noh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5V57_32080 (ligA)
03410 Base excision repair
G5V57_32080 (ligA)
03420 Nucleotide excision repair
G5V57_32080 (ligA)
03430 Mismatch repair
G5V57_32080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noh03032
]
G5V57_32080 (ligA)
03400 DNA repair and recombination proteins [BR:
noh03400
]
G5V57_32080 (ligA)
Enzymes [BR:
noh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G5V57_32080 (ligA)
DNA replication proteins [BR:
noh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G5V57_32080 (ligA)
DNA repair and recombination proteins [BR:
noh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G5V57_32080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G5V57_32080 (ligA)
MMR (mismatch excision repair)
DNA ligase
G5V57_32080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G5V57_32080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
FdhE_central
DUF4796_N
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
QIG51936
LinkDB
All DBs
Position
complement(6764573..6766672)
Genome browser
AA seq
699 aa
AA seq
DB search
MTPAAKKTVDKLTQKEAASELQRLAAEIAHHDERYHGEDAPEISDADYDALRLRNEAIEA
RFPELIRDDSPSQRVGAAPQAKFGKVRHRVPMLSLGNGFSDEDVVEFLGRIRRFLNLAED
APIDVTAEPKIDGLSLSLRYEKGKLVQGATRGDGSEGENVTLNVRTVKDIPNHITAKDVP
DVLEVRGEIYMSHKDFARMNEKQIQAGEKVFANPRNAAAGSLRQLDPAITASRPLRFFAY
TWGEVSKLPGVTQWDVIQAFKRWGFPVNPLMKLCHSANELLAQYHQIEADRANLGYDIDG
VVYKVNRLDWQQRLGFVSRAPRWGLAHKFTAEKAMTILEGIDIQVGRTGAMTPVARLKPV
TVGGVVVANATLHNEDEIQRKDIRIGDTVIVQRAGDVIPQILGFVEDKRPKSAKPYEFPT
TCPVCGSHAVREVNEKTGKVDAVRRCTGGLICAAQRAERLKHFVSRNAFDIEGMGDKVIE
EFLSLGFIASPPDIFTLEERKVKVAELEGWGETSARNLFVAINARREIGLDRFIFALGIP
HIGETNARLLARAYGTAEALREAMRAAAKGKEEEAYQELLSHEGIGPIVAEAVVDFFGEP
HNVEVFDRLLAQVSAAPLEAVRQSPVSGKTVVFTGALEKMTREEAKAMAERLGAKVAGSV
SKKTDLLVAGPGAGSKLKDAQKHGVEVIDEDEWFRRVGG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgacccctgccgccaagaagaccgtcgacaagctcacccagaaggaagccgccagcgaa
ttgcagcggcttgccgccgagatcgcgcatcacgatgagcgctatcacggtgaggacgcg
ccggagatttccgacgccgattacgacgcgctgcgcctgcgcaatgaggcgatcgaggcg
cgctttcctgaactcatacgcgacgactcgccttcgcagcgggtaggggcggcgccacag
gctaaattcggcaaggtccggcaccgcgtgccgatgctctccctcggcaacggtttctcg
gatgaagatgtggtggagttcctcggtcgcatccgccgcttcctcaatctcgccgaggac
gcgcccatcgatgtgacggccgagcccaagatcgacggcctgtcgctgtcgctgcgctac
gagaagggcaagctcgtccagggcgccacacgcggcgacggttcggaaggcgagaatgtc
accctcaatgtccgcaccgtgaaggacatccccaatcacatcacggccaaggacgtcccg
gacgtgctcgaggtcaggggcgaaatctatatgtcccacaaggacttcgcccggatgaat
gagaaacagattcaagccggcgaaaaggtcttcgccaatccgcgcaatgccgcggcaggc
tcgctgcgccagctcgatccggctattaccgcaagccggcccttgcgcttcttcgcctac
acttggggcgaggtgtcgaaactgccgggcgttacgcaatgggacgtcatccaggccttc
aagcgctggggcttcccggtcaatccgctgatgaagctctgccattcggccaacgagttg
ctggcgcagtatcaccagatcgaggccgaccgggccaatctcggctacgacatcgacggc
gtcgtctacaaggtgaaccggctcgactggcagcaaaggctgggcttcgtcagccgggcg
ccgcgctggggtctcgcgcataaattcaccgccgaaaaggcgatgacgatcctcgaaggc
atcgacatccaggtcggccgcaccggcgccatgacgccggtggcgaggctcaagcccgtc
accgtcggcggcgtcgtcgtcgccaatgcgacgcttcacaatgaggatgagatccagcgc
aaggacatccgcatcggcgacacggtgatcgtgcagcgcgccggtgacgtcattccgcag
atccttggcttcgtcgaggacaagcggcccaaaagcgccaagccgtacgaattcccgacc
acctgtccggtctgcggcagccacgcggtgcgcgaggtcaatgagaagaccggcaaggtc
gacgcggtccggcgctgcaccggcggcctcatctgtgctgcccagcgcgccgagcgcctg
aagcacttcgtatcgcgcaacgccttcgatatcgagggcatgggcgacaaggtgatcgag
gagttcctttcgctcggcttcatcgcgtcgccgcccgacatcttcacgctggaagagcgc
aaggtgaaggtcgcggagctcgaaggctggggtgaaacgagtgcgcgcaacctcttcgtc
gcgatcaatgcgcggcgcgagatcgggctcgaccgcttcatcttcgcgctcggcataccc
catatcggcgaaaccaatgcgagacttctggcgcgcgcctatggaacggcggaggcgctg
cgcgaagccatgcgcgcggccgccaagggcaaggaagaggaggcctatcaggagcttctg
tcgcatgaaggcatcggccccatcgtcgccgaagcggtcgtcgacttcttcggtgagccg
cataatgtcgaggtcttcgacagactgctggcacaggtgagcgcggcgccgctcgaagcg
gtgcggcagagcccggtctccggcaagaccgtcgtcttcaccggcgctctcgaaaagatg
acgcgcgaggaggccaaggccatggcggaacggctcggcgccaaggtggcgggctcggta
tcgaagaaaaccgatcttctggtcgccggtcccggcgccggttcgaagctcaaggacgcg
cagaagcacggcgtcgaggtgatcgatgaggacgagtggttccgccgcgtcggcggttag
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