Nocardioides jishulii: FCL41_05095
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Entry
FCL41_05095 CDS
T06163
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
noi
Nocardioides jishulii
Pathway
noi03030
DNA replication
noi03410
Base excision repair
noi03420
Nucleotide excision repair
noi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCL41_05095 (ligA)
03410 Base excision repair
FCL41_05095 (ligA)
03420 Nucleotide excision repair
FCL41_05095 (ligA)
03430 Mismatch repair
FCL41_05095 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noi03032
]
FCL41_05095 (ligA)
03400 DNA repair and recombination proteins [BR:
noi03400
]
FCL41_05095 (ligA)
Enzymes [BR:
noi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCL41_05095 (ligA)
DNA replication proteins [BR:
noi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCL41_05095 (ligA)
DNA repair and recombination proteins [BR:
noi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCL41_05095 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCL41_05095 (ligA)
MMR (mismatch excision repair)
DNA ligase
FCL41_05095 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCL41_05095 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
Arteri_nsp7a
DUF7445
HHH
Motif
Other DBs
NCBI-ProteinID:
QCX26974
LinkDB
All DBs
Position
1076409..1078511
Genome browser
AA seq
700 aa
AA seq
DB search
MSGDEVKAATPEARERHLVLAQEVDEARFRYYVQDRPTLSDADFDARMRELEALEEEFPE
LRTPDSPTQKVGGAVSTEFTPVDHLQRMESLDNAFTPEELTSWYERILRDGITSPALLCE
LKVDGLAINLLYEDGRLVRALTRGDGRTGEDVTPNVRTIASIPHRLTPTEEFPVPRRIEV
RGEIFLPVEAFERLNAAMLDAGKPAFANPRNAAAGSLRQKDPRVTATRDLDMVCHGIGAR
EGFDPVTQSQAYEAMAAWGLPTSSRVKVFNNLDDVRAFIVDHGERRHEVEHEIDGVVVKV
DEVASQRRLGSTSRAPRWAIAWKYPPEEVHAKLLGIEVNTGRTGRVTPFGRMEPTKVAGS
TVEMATLHNFYEVKRKDVRPGDTVILRKAGDVIPEILGAVPELRPEGLPEWVPPTHCPAC
GTELVEQKAGDKDRRCPNHRSCPAQLMERVFHVGSRGAFDIEGLGYEAARALLDAGVLTD
EGDVFALSEDDLLRTELFTRAPKKGEEGRQLTANGRKLLDNLQVRTKAPLWRVLVALSIR
HVGPTAARALATEFGTMEAVRTADEETLAQTEGVGGIIAASVREWFDGPEGEWHTGIVDK
WAAAGVTMADERDESVPRTLEGLTVVATGSLVNFTRDSVKEAIITRGGKASGSVSKKTDY
VVVGDNAGSKAEKAEQLGVRMLDEAQFEKLLAEGPAGLGD
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgacgaggtcaaggcggcgacccccgaggcgcgtgagcgccacctggtcctg
gcccaggaggtcgacgaggcgcgcttccgctactacgtgcaggaccgccccaccctctcc
gacgccgacttcgacgcccggatgcgcgagctggaggcgctggaggaggagttccccgag
ctgcgtacgcccgactccccgacgcagaaggtggggggagcggtctcgaccgagttcacc
ccggtcgaccacctccagcgcatggagtcgctcgacaacgccttcacgcccgaggagctc
acgagctggtacgagcgcatcctgcgcgacggcatcacctccccggccctgctctgcgag
ctcaaggtcgacggcctcgccatcaacctgctgtacgaggacgggcgcctcgtgcgcgcc
ctcacccgcggggacggccggaccggcgaggacgtcacccccaacgtgcgcaccatcgcc
tccatcccgcaccggctcacgcccaccgaggagttcccggtgccacgtcgcatcgaggtg
cgcggcgagatcttcctgccggtcgaggccttcgagcggctcaacgccgcgatgctcgac
gccggcaagcccgccttcgccaacccccgcaacgccgccgccggctccctgcgccagaag
gacccgcgggtcaccgccacccgcgacctcgacatggtctgccacggcatcggggcccgc
gaggggttcgacccggtcacgcagtcccaggcctacgaagccatggccgcgtgggggctg
cccacctcgagtcgtgtgaaggtcttcaacaacctcgacgacgtgcgggccttcatcgtc
gaccacggcgagcggcgccacgaggtcgagcacgagatcgacggcgtcgtggtgaaggtt
gacgaggtcgcctcccagcgtcggctcggctccaccagccgggcgccgcgctgggcgatc
gcgtggaagtatccgcccgaggaggtccacgccaagctcctgggcatcgaggtcaacacc
ggccgcaccggccgcgtcacgcccttcggccggatggagcccaccaaggtggccggatcc
acggtcgagatggccacgctgcacaacttctacgaggtgaagcgcaaggacgtacgcccc
ggcgacaccgtgatcctgcgcaaggccggcgacgtgatccccgagatcctcggcgcggtc
cccgagctgcgtccggagggtctgcccgagtgggtgccgccgacgcactgcccagcctgc
ggcaccgagctggtcgagcagaaggccggtgacaaggaccgacgctgccccaaccaccgc
tcctgccccgcccagctgatggagcgcgtcttccacgtcggatcccgcggcgccttcgac
atcgaagggctcggctacgaagccgcccgcgccctgctcgacgccggcgtcctcaccgac
gagggcgacgtcttcgccctgagcgaggacgacctcctgcgcaccgaactcttcacccgg
gcgccgaagaagggggaggagggccgccagctcaccgccaacggccgcaagctcctcgac
aacctccaggtgcggaccaaggcgccgctgtggcgggtgctcgtcgccctctcgatccgc
cacgtcggcccgacggccgcccgcgcgctggccaccgagttcggcacgatggaggcggtc
cgcacggccgacgaggagacgctcgcccagaccgagggtgtcggcgggatcatcgccgcc
tccgtgcgcgagtggttcgacgggccggagggggagtggcacaccggcatcgtggacaag
tgggccgctgccggcgtcaccatggccgacgagcgcgacgagtcggtgccccgcacgctg
gaggggctgaccgtcgtcgcgaccggctccttggtcaacttcacccgcgactcggtcaag
gaagcgatcatcactcgcggcggcaaggcttcggggtcggtgtcgaagaagaccgactac
gtcgtggtgggcgacaacgccggctccaaggccgagaaggccgagcagctgggcgtgcgc
atgctggacgaggcgcagttcgagaagctgctcgccgaagggccggcggggctgggcgac
tga
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