Nonlabens ponticola: EJ995_07105
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Entry
EJ995_07105 CDS
T05856
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
noj
Nonlabens ponticola
Pathway
noj03030
DNA replication
noj03410
Base excision repair
noj03420
Nucleotide excision repair
noj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJ995_07105 (ligA)
03410 Base excision repair
EJ995_07105 (ligA)
03420 Nucleotide excision repair
EJ995_07105 (ligA)
03430 Mismatch repair
EJ995_07105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noj03032
]
EJ995_07105 (ligA)
03400 DNA repair and recombination proteins [BR:
noj03400
]
EJ995_07105 (ligA)
Enzymes [BR:
noj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJ995_07105 (ligA)
DNA replication proteins [BR:
noj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJ995_07105 (ligA)
DNA repair and recombination proteins [BR:
noj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJ995_07105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJ995_07105 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJ995_07105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJ995_07105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
RNA_ligase
Nlig-Ia
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AZQ44011
UniProt:
A0A3S9MXN6
LinkDB
All DBs
Position
1566871..1568943
Genome browser
AA seq
690 aa
AA seq
DB search
MEIKKQIETLRAELRQYNYEYYVQDNASVSDFEFDKKLEQLKALEASHPEFADLSSPSLR
VGGEITKNFKTVKHINRMYSLDNSYDENDLKDWETRNRKIVDGDIQYVCELKYDGASISL
HYEQGKFVQAVTRGDGSQGDDVTANVRTIKSVPLQLQGDNIPEKFEIRGEIVLPWDGFHK
MNEEREEQGLELYRNPRNTASGSLKLQDSSVVASRPLECLLYQLVGDNLPFETQYAGLEA
ARSWGFKVPQESELVSGVDGVLDYVQKWDERRKDLPYETDGVVIKINSLRQQEELGFTAK
APRWAMAYKFSAEQVSTILEEITYQVGRTGAITPVANLQPVEISGTTVKRASLHNADQIE
RLDIRVNDTVHVEKGGEIIPKIVAVDLLQRPDYSEPTTYATHCPECNTALERKAGEAQHF
CPNDIGCPPQIKGRIQHFISRKAMDIDGIGSETVDQLVEAGMINNYADLYDLTADDILPL
ERMAQKSAENLVQGVEASKQVEFERVLFALGIRYVGETVAKKLAHHYNSMDKLMAMPASD
DSESDDLFSSVDDGSAFAKAEKIQELIAIPEIGERIAESVVDFITDEKHREIIGRLKHHG
LNMKLSEKQLEGQTDILASKSIVVSGVFEMSRTDLKKLIEKNGGKVSSSISSKTDYLIRG
EKMGPSKLEKAEKLGVEMISEAEFLELIAN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggaaataaagaagcaaatagaaacactgcgagcagaattaaggcaatacaattatgaa
tattatgtacaggataatgccagcgtttctgattttgaatttgataaaaaactagagcaa
ctcaaagcgctagaagcttcacatccagagtttgcagatctatcaagtcctagcttgaga
gtaggtggtgaaatcactaaaaactttaaaaccgtcaagcatatcaatcgcatgtactcg
cttgacaactcttatgatgagaacgatctcaaggattgggaaacacgcaatagaaagata
gtggatggcgatatccaatatgtttgcgagttgaaatacgacggtgcaagtattagcctg
cactatgagcaaggcaagtttgtccaggccgtaactcgcggtgacggctcacaaggtgac
gatgtaacagcaaatgtgcgtaccatcaaatcagtaccgttacaactacaaggcgataac
atcccagaaaaatttgagatacgaggcgagatcgttttgccatgggatggatttcataaa
atgaatgaggaacgagaggaacaaggtctagaactgtatcgcaatccgcgtaatacggct
agcggtagtttgaaattacaggatagtagtgtcgtcgcttcaaggccgttagaatgtttg
ctttatcagttggttggtgacaatttgccttttgaaacccaatacgcaggattagaagca
gcacgttcttggggctttaaagtgccgcaggaaagtgaattggtaagcggtgttgatggc
gttcttgattatgttcaaaaatgggatgagcgtcgcaaggatttaccgtatgaaactgat
ggcgttgtaattaaaatcaatagtcttagacaacaggaagaactaggttttacagccaaa
gcacctaggtgggcgatggcctataagtttagtgcagagcaagtatcaaccattcttgag
gaaataacctatcaagtgggccgtacgggcgcgatcacgcctgtggcaaatttgcagcct
gtagagatatcgggaactaccgtgaaacgagctagtctgcacaacgctgatcaaatagag
cgattggatataagagtcaatgataccgtccatgtggaaaaaggtggcgagattatccct
aaaattgttgctgtagatttactacaacgaccagattatagcgagccaacaacctatgca
acgcattgtccagaatgtaatacagccttagaacgtaaagctggcgaggcgcaacatttt
tgtcccaatgacataggttgcccaccacaaattaagggtcgcatccagcattttatttca
cgcaaggcaatggatattgacggcattggttcagagacggtcgatcaattggttgaagca
ggaatgatcaataattatgcagatttgtatgatctaaccgctgatgacatcttaccgctg
gaacgcatggcacaaaaaagcgcagaaaatctagtgcaaggtgtagaggcaagcaaacaa
gtagagtttgagcgcgtgctatttgctttgggaatacgatatgtgggtgaaacggtcgcc
aaaaaactagcgcatcactacaatagcatggacaaactcatggccatgccggcatcagat
gattcagagtctgacgacttatttagtagtgtagacgatggttccgctttcgcgaaagca
gaaaaaatacaagagttaattgcaattccagaaataggagaacgcattgcagaatcggtt
gtagattttattacggacgagaaacatcgcgaaataatcgggcgtttgaaacatcatgga
ctcaatatgaagttaagcgagaagcagctggaaggtcaaacagatattctggcaagtaaa
agcatcgtcgtctctggagtatttgaaatgtctcgaaccgacctcaaaaagctcatcgag
aaaaatggtggtaaagtaagcagctcaatctcatcaaaaacagactacctcataagaggt
gaaaaaatgggcccatcaaaacttgaaaaagctgagaagttaggtgtagagatgatcagt
gaggctgagtttctagaattgattgccaactaa
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