Noviherbaspirillum sp. UKPF54: FAY22_06260
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Entry
FAY22_06260 CDS
T06116
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nok
Noviherbaspirillum sp. UKPF54
Pathway
nok03030
DNA replication
nok03410
Base excision repair
nok03420
Nucleotide excision repair
nok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAY22_06260 (ligA)
03410 Base excision repair
FAY22_06260 (ligA)
03420 Nucleotide excision repair
FAY22_06260 (ligA)
03430 Mismatch repair
FAY22_06260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nok03032
]
FAY22_06260 (ligA)
03400 DNA repair and recombination proteins [BR:
nok03400
]
FAY22_06260 (ligA)
Enzymes [BR:
nok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAY22_06260 (ligA)
DNA replication proteins [BR:
nok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAY22_06260 (ligA)
DNA repair and recombination proteins [BR:
nok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAY22_06260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAY22_06260 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAY22_06260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAY22_06260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QDZ27592
UniProt:
A0A5B8N5U2
LinkDB
All DBs
Position
1333948..1336017
Genome browser
AA seq
689 aa
AA seq
DB search
MQPDLFSIPQDASPPNPEASHWQERAAWLKTELNRHSHAYYVLDNPTIPDAEYDRMFREL
VALEQAHPDLITSDSPTQRVGGKPLPQFDQVRHSTPMLSLNNAFDEQDAVAFDRRVREGL
EIAEEVEYSTELKFDGLAISLRYENGVLTQAATRGDGATGENVTPNIRTVRAVPLRLHTD
QPPALLDVRGEVLMYKADFAKLNERQRTAGQKEFVNPRNAAAGSLRQLDARITAQRTLRF
FAYGIGMLEGAPMPTSHAALLDWYGSLGLPVCRERAVVKGAQGLLDFFHGIAAKRQQLPY
DIDGVVYKVNRLEHQLKLGYVSRAPRFAIAHKFPAEEAMTVVQDIGVQVGRTGAITPVAR
LAPIFVGGVTVTNATLHNEDEVRRKDIRIGDTAIVRRAGDVIPEVVAYVPELRPDNAREF
RMPVQCPVCGSPIVRPEEEAIARCSGGWIKCAAQRKGGLLHFVSRRAMDIEGFGEQLIEQ
LVDKHIVTTAADLYRLGLTALVELDRMADKSAQNVLNALEKSKSTTLARFIYALGIRHVG
EATAKELAHHFGSLDALLNASEEQLLEVADIGPVVARSITAFLSEAMNRELIEQLRAAGI
HWTESERKVEVLRPMQGKTFVLTGTLPTLTRDEAAGKIESAGGKVAGSVSKKTSYVVAGE
EAGSKLVKAQELGITIIDEAGLLHLLEQQ
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccggatttattttcgataccccaggacgcttccccgccgaatccggaagcaagc
cactggcaggaacgcgccgcatggctcaagaccgaactgaaccggcatagccatgcgtac
tatgttctcgacaacccgactattcccgacgcggaatatgacaggatgttccgcgaactg
gtggcgctggagcaggcgcatcccgacctcattacctcggattccccgacccagcgggta
ggcggcaagccgctgccacagttcgaccaggtgcgtcattcgacgccgatgctctcgctg
aacaacgcgtttgacgaacaggacgcggtggcattcgatcgccgcgtgcgggaagggctt
gaaattgcggaggaggtggagtattccacggaactgaaattcgacgggctggcgatcagc
ctgcgctacgagaatggcgtcctgacccaggccgcaactcggggcgacggcgcgaccggc
gagaatgtcacgcccaacattcgtaccgtgcgcgccgttccattgcgcctgcataccgat
cagcctcccgctctactcgacgtacgcggtgaagtgctgatgtacaaggccgatttcgcc
aagctcaacgagcgccagcgtacggcgggacagaaggaattcgtcaatccgcgtaatgcg
gcggcgggtagtctgcgccaacttgacgcgcgcattaccgcacagcgcacgctgcggttt
ttcgcgtacggtatcggcatgctggaaggcgcgccgatgccgacttcgcatgccgcgctg
ctcgattggtatggcagcctcggactgccagtctgccgggagcgcgccgtggtgaagggg
gcgcaagggctgctcgatttttttcatggcatcgccgcgaaacgacaacaactgccgtat
gacatcgacggcgtggtgtacaaggtcaaccggctggagcatcagctgaagcttggctac
gtctcgcgcgccccgcgtttcgcgatcgcgcataaatttccggccgaggaagcgatgact
gtcgtgcaggatatcggcgttcaggtggggcgaactggcgcgattacgccagtggcccgg
ctcgctccgatattcgtcggcggcgtgaccgtgaccaatgccaccctgcacaatgaggac
gaggtccggcgcaaagatatccggattggcgataccgcgatcgtgcggcgtgccggcgac
gtcataccggaggttgttgcctatgttcccgaactgcgtccggataatgcccgcgaattc
aggatgccggtgcaatgcccggtctgtggctcgcccatcgtccggccggaagaggaagcc
attgcgcgctgttccggtggatggatcaagtgcgcggcacagcgcaagggcggtttactg
cacttcgtatctcgccgcgcgatggatatcgaagggtttggcgagcagttgatcgaacag
ctggtcgataaacatattgttaccaccgcagccgacttgtacaggctcgggctgaccgcg
ctggttgaactggatcgcatggccgacaagtcggcgcaaaacgtgctcaacgcgctggaa
aaatccaaatcgaccaccttggcgcgcttcatctacgcattggggattcgtcatgtcggc
gaggcgacggcaaaggaattggcgcatcatttcggcagtctggatgcgctgctgaatgcg
tcggaagaacaactgctcgaggtggccgacatcggcccggtggtggcgcgctcgatcacg
gctttcctgtccgaggcgatgaatagggaattgatcgagcagctgcgtgccgccggtatt
cactggacggaaagcgagcgcaaggtggaggtgctcaggccgatgcagggcaagacattc
gttctcaccggcactttgccgacgctgacccgggatgaggcggccgggaaaatcgagtcc
gcaggcggaaaggtcgcgggctcggtatcgaagaagaccagctacgtggtggccggcgag
gaagcaggcagcaagctggtcaaggcgcaggagcttggcatcacgattatcgacgaagca
ggcttgcttcatttactggaacagcaatga
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integrated database retrieval system
