Novosphingobium olei: NSDW_14130
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Entry
NSDW_14130 CDS
T09939
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nol
Novosphingobium olei
Pathway
nol03030
DNA replication
nol03410
Base excision repair
nol03420
Nucleotide excision repair
nol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NSDW_14130 (ligA)
03410 Base excision repair
NSDW_14130 (ligA)
03420 Nucleotide excision repair
NSDW_14130 (ligA)
03430 Mismatch repair
NSDW_14130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nol03032
]
NSDW_14130 (ligA)
03400 DNA repair and recombination proteins [BR:
nol03400
]
NSDW_14130 (ligA)
Enzymes [BR:
nol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NSDW_14130 (ligA)
DNA replication proteins [BR:
nol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NSDW_14130 (ligA)
DNA repair and recombination proteins [BR:
nol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NSDW_14130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NSDW_14130 (ligA)
MMR (mismatch excision repair)
DNA ligase
NSDW_14130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NSDW_14130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BEV00319
LinkDB
All DBs
Position
1492035..1494110
Genome browser
AA seq
691 aa
AA seq
DB search
MSVEGMSEADAANELMRLARTIAKHNRLYHAEDAPEIPDAEYDALVRRNAELEAAFPHLI
RPDSPSALVGHEVAASPLSKVRHEVRMMSLDNAFSDEEVEEFVARVRRFLNLPADAEVAM
TAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTANVAHIADIPQELKGEGLFDVPAM
FEIRGEVYMAKADFLSLNERQAEAGDKVFANPRNAAAGSLRQKDASVTAARPLRFLAHGW
GAASEVPAATQFEMMRKIAAWGVPVSPLLVRCSSSADMIAHYRAIQQARADLPYDIDGVV
YKVDRLDWQERLGFVAKAPRWGMAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLKPVLV
GGVTVTNVTLHNRDEIARHGLRVGDRVVLQRAGDVIPQVVENLTRDEPREAYHFPDHCPE
CQSEAVAEEGEVDVRCTGGLICPAQRVERLKHFVSRAALDIEGLGEKTIVEFFGLGWLES
PADIFRLRKRRSDIVGREGWKDKSVDNLLAAIEAKRTPDAARLLFGLGIRHVGAVTARDL
LKRFVTLPALREAAQKAREGDSDAVADLLSIDGVGPVVVEALGDFFHEHHNIEVWDDLLS
EVTPPDYIVETRASAVAGKTVVFTGKLETMSRDEAKAQAESLGARAAGSVSPKTDLIVAG
PGAGSKLKKAAELGIEVIDEAAWAEIVRSAG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgagggaatgtccgaagccgatgccgccaacgaactgatgcggctggcaagg
acgatagcgaagcacaaccggctctaccacgccgaggacgcgcccgagatcccggacgcc
gaatacgacgcgctggtgcgccgcaatgccgaactcgaagccgcgttcccccacctgatc
cggcctgattccccgagcgcgctcgtgggacacgaagtcgccgcctcgccgctgagcaag
gtgcgccacgaggttcgcatgatgagcctcgacaacgcgtttagcgatgaagaggtagag
gaattcgtcgcccgcgtccgccgcttcctcaacctgccggccgatgcggaagtggcgatg
accgccgaggacaagatcgacggcctgtcctgctcgctgcgctatgagaacggcaagctg
gtgcgcgccgccacgcgcggcgacgggcaggtgggcgaggatgtgaccgccaacgtcgcg
cacattgctgacatcccgcaggagctgaagggcgaagggctgttcgacgtgcccgccatg
ttcgagattcgcggcgaggtctacatggccaaggccgatttcctcagcctcaacgaacgg
caggcggaggcgggcgacaaggtcttcgccaacccgcgcaacgccgccgctggctcgctg
cggcaaaaggatgccagcgtgaccgccgcccgccccttgcgcttcctcgcccacggctgg
ggcgcggcgagcgaagtgccggcggcgacgcagttcgagatgatgcgcaagattgcagcg
tggggcgtgcccgtctcgccgctgctggtgcgctgctcgtccagcgcggacatgatcgcg
cattaccgcgctatccagcaggcgcgcgcggacctgccctacgatatcgacggcgtcgtc
tacaaggtggatcggctcgactggcaggaacgcctgggcttcgtcgccaaggcgccgcgc
tggggcatggcgcacaagttcccggccgagcgcgccgagaccacgctcgaagccatcgac
atccaggtcggccgtaccggcaagctcacccccgtcggccgattgaagccggtgctggtc
ggcggcgtcactgtcaccaacgtcacgctgcacaatcgcgacgagatcgcccgccatggg
ctgcgcgtcggcgaccgcgtcgtgctccagcgcgcgggcgacgtgatcccgcaagtggtc
gagaacctcacccgcgacgaaccgcgtgaggcttaccactttcccgaccactgccccgaa
tgccagtccgaagccgtggccgaagagggcgaggtcgatgtgcgctgcactggcggcctc
atctgccccgcccagcgcgtcgagcgcctcaagcacttcgtcagccgcgcagcgctcgat
atcgaagggctgggcgagaagaccatcgtcgaattcttcgggctcggctggctcgaaagc
cctgcagacatcttccgtctgcgcaagcgccgcagcgacatcgtcgggcgcgagggctgg
aaggacaagtctgtggataacctgttggcagcgatcgaggcgaagcgcacgcccgatgcc
gcgcgcctcctgttcggcctcgggatccgccacgtcggtgcggtcaccgcgcgcgacctg
ttgaagcgtttcgtcacgctgcctgccttgcgcgaagcagcgcaaaaggcgcgggaaggg
gacagcgacgcggtggccgatctgctttcgatcgacggcgtcggcccggtggtggtcgaa
gcgctgggcgatttcttccacgaacatcacaacatcgaagtgtgggacgacctgctctcg
gaagtaaccccgcccgactacatcgtcgaaacgcgcgcgagcgcggtcgccggaaagacg
gtcgtgttcaccggcaagctcgaaaccatgagccgcgacgaagccaaggcgcaggccgaa
tcccttggcgcccgcgcggcaggctcggtttcacccaagaccgacctgatcgtcgcaggc
cccggcgcgggctcgaagctcaagaaggctgccgaactcggcatcgaggtgatagacgaa
gccgcctgggcggaaatcgtccgcagcgccggctga
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