Nostoc sp. NIES-3756: NOS3756_01010
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Entry
NOS3756_01010 CDS
T04170
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
non
Nostoc sp. NIES-3756
Pathway
non03030
DNA replication
non03410
Base excision repair
non03420
Nucleotide excision repair
non03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
non00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NOS3756_01010
03410 Base excision repair
NOS3756_01010
03420 Nucleotide excision repair
NOS3756_01010
03430 Mismatch repair
NOS3756_01010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
non03032
]
NOS3756_01010
03400 DNA repair and recombination proteins [BR:
non03400
]
NOS3756_01010
Enzymes [BR:
non01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NOS3756_01010
DNA replication proteins [BR:
non03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NOS3756_01010
DNA repair and recombination proteins [BR:
non03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NOS3756_01010
NER (nucleotide excision repair)
GGR (global genome repair) factors
NOS3756_01010
MMR (mismatch excision repair)
DNA ligase
NOS3756_01010
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NOS3756_01010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_lig_T4_1
RNA_pol_A_CTD
Myco_19_kDa
Motif
Other DBs
NCBI-ProteinID:
BAT51179
LinkDB
All DBs
Position
complement(127488..129521)
Genome browser
AA seq
677 aa
AA seq
DB search
MVQIQPETKRVQELRQLLQQASYAYYVMDAPIMEDAVYDQLYRELQQLETQYPELITPDS
PTQRVGERPATQFNSVRHNIPLYSLENAFNVEELQNWDQRWRRQVAKTEAEYVSELKIDG
SAIALTYQDGILVRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGIAPIEKVEVRGEAFL
PLEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVAKRRLDFFSYTLHIPGMDDAS
IANTQWEALELLQKMGFRVNPNHKLCESLADVADYYKYWDTERLNLPYMTDGVVVKLNSF
KLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTVS
RATLHNSDRITQLDIRIGDTVIVRKAGEIIPEVVRVLKELRPTDTQPFIMPSHCPVCGQS
VVRETGEAVTRCVNASCQAILKGSIEHWVSRDALDIKGVGEKLVHQLVDKGLVHSVADLY
DLAAQQLLALERMGEKSAQKLIEAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKYRSV
EQLSTAKQSEIAGIYGIGAEIAQSVYQWFRINANQNLIERLQGAGLQFTNTEEISDVDHA
NLRLAGKTFVITGTLPTLKRDEAKALIQKAGGKVTDSISKKTDYLVLGEDAGSKLEKAQA
LGIAQLTEAQLLVILEN
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaattcagccagaaactaaacgcgtccaggaactgcgtcaactgttgcaacaa
gctagttatgcttattatgtcatggatgcacccatcatggaggatgcagtatatgaccaa
ctttatcgagaactgcaacaactagaaactcagtatccagaattaatcacgccagatagt
ccgacgcagcgtgtgggggaaaggccggcaactcaatttaactctgtgcgtcacaacatt
cctctgtatagcttggaaaatgcgtttaatgtggaggagttgcaaaattgggatcagcgt
tggcggcgacaagttgctaagacggaggcggaatatgtctcagaactaaaaattgatggt
tcagcgatcgcactcacttaccaagatggtattttagtcaggggcgcaactagaggcgat
ggggtgatgggtgaagatattacccaaaatgtccgcacaattcgctctattcctttgcgg
ttgaattttgatggtattgcaccaattgaaaaggtggaagttagaggggaagctttttta
cctctggaagtatttaaacaaattaacgaagaaagacaaaaagctggagaacagttattt
gctaaccctcggaatgcggcggctggtacactcagacagttagactcgcgtattgtcgcc
aagcggcggttagattttttctcttacaccttacacatccccggaatggatgacgcgagt
attgctaacacccaatgggaagctttggaattattacagaagatgggttttcgggtgaac
cctaaccataagctttgtgagtcgttggcagatgttgccgattactataaatattgggat
acggaaagattaaatttaccctacatgaccgatggggtggtagtaaagctcaactccttt
aagctgcaagaacagttaggctttacccaaaaatttccccggtgggcggtagcgttaaag
tatcccgccgaagaagcacccacccgtgtagaaaatattgcggtgaatgtggggaggacg
ggggcgttaacacctttggcggagatgcgtccggtacagttggcgggaactaccgtatct
agggctactttacataatagcgatcgcatcactcaattagacatccgcatcggtgatact
gtcattgtccgtaaggctggggaaatcattcccgaagttgtcagggttctgaaggaactg
cgtccgactgatacccaaccttttattatgcctagccattgtcccgtgtgcggacagtct
gtggtgcgggagacgggggaagctgttactcgttgtgtgaatgcttcttgtcaagccatt
ctcaaaggttcgattgaacattgggtgagtcgtgatgctttagatatcaaaggtgtaggg
gaaaaattggtgcatcaactcgtagataaaggcttggtgcattccgtcgctgatttatat
gacttggcagcacagcaattgttagcattagaaagaatgggagaaaaatcagcacagaaa
ttaattgaggcgatcgcccaatcaaaaaatcagccttggtcaagggtattatatggttta
ggcatccgtcatgtaggcagcgttaacgcccaattattaacagaaaaataccgctcagta
gagcaattatcgaccgccaaacaatcagaaattgcaggtatttatggtattggagcagaa
attgctcagtctgtttatcagtggtttcggattaatgccaatcaaaatttaattgaacgc
ttgcaaggcgcaggattacagtttacaaataccgaagaaatatctgacgttgatcatgct
aacctgagattagcgggtaaaacttttgtcattactggtactttacctacgttaaaacgc
gatgaagccaaagctttaattcaaaaagctgggggaaaagtaactgattcaattagtaag
aagacggattatttagttctgggtgaagatgcaggatctaaattagaaaaagcgcaagca
ttagggattgcacagttaactgaagcccagttgttagtaattttagaaaactag
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