Nostoc sp. PCC 7107: Nos7107_2135
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Entry
Nos7107_2135 CDS
T02362
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nos
Nostoc sp. PCC 7107
Pathway
nos03030
DNA replication
nos03410
Base excision repair
nos03420
Nucleotide excision repair
nos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nos7107_2135
03410 Base excision repair
Nos7107_2135
03420 Nucleotide excision repair
Nos7107_2135
03430 Mismatch repair
Nos7107_2135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nos03032
]
Nos7107_2135
03400 DNA repair and recombination proteins [BR:
nos03400
]
Nos7107_2135
Enzymes [BR:
nos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Nos7107_2135
DNA replication proteins [BR:
nos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Nos7107_2135
DNA repair and recombination proteins [BR:
nos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Nos7107_2135
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nos7107_2135
MMR (mismatch excision repair)
DNA ligase
Nos7107_2135
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nos7107_2135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Zn_ribbon_NUD
Flu_PB2_1st
PHD_NSD
Motif
Other DBs
NCBI-ProteinID:
AFY42756
UniProt:
K9QC74
LinkDB
All DBs
Position
2477979..2480021
Genome browser
AA seq
680 aa
AA seq
DB search
MIQTQPQLKRIEELRQLLQQASYAYYVLDAPIMGDAVYDQLYRELQQLETQNPELVTPDS
PTQRVGERPATHFTSVRHNIPLYSLENAFNVDELQAWDQRWRRQLPTTDAVKYVSELKID
GSALALTYQDGVLVRGATRGDGVTGEEITQNVRTIRSIPLRLNFDGIEPIERVEVRGEAF
LPLEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHIPGMDDA
SIANTQWEALELLQKMGFRVNPNHQLCESLAEVAEYYKYWDTERLNLPYMTDGVVVKLNA
FKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTV
SRATLHNSDRIVQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTVPFVMPSHCPVCGQ
EVVRESGEAVTRCVNASCAAILKGSIEHWVSRDALDIKGVGEKLVHQLVDKGLVHSVADL
YDLTEAQLCSLERMGEKSAQKLVDAIAQSKNQPWHRVLYGLGIRHVGSVNAQLITEKYPA
VEKLETAKQSDIAGIYGIGAEIAQSVYQWFQIDANQALIERLKTANLQFVADETTTIGNS
HQKFAGKTFVVTGTLPTLKRDEAKALIQKAGGKVTDSVSKKTDYLVVGEDAGSKLEKAQA
LGITQLTETQLLNMLEVEIN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgattcagactcagcctcaactcaagcgcatagaagaattacgccagcttttgcaacaa
gccagttacgcctattatgttttagacgcgcccatcatgggagatgcagtctatgaccag
ctataccgcgaattgcaacagttagaaactcagaatccagaattggttacacccgacagt
ccaactcagcgggtgggtgaaagaccagccacacattttacctcagtacgccacaatatc
cctttgtacagtttggagaatgcttttaacgttgatgagttgcaagcttgggatcaacgt
tggcggcgacaactgccgacaactgacgcggtaaaatatgtctcggaactgaaaattgat
ggttcggctttggcgctgacttatcaagatggtgtattagtcaggggtgcaactagaggt
gatggggttacgggtgaagaaattacccaaaatgtgcgaacaattcgttctattcccttg
cgtttaaactttgatgggatagaaccaatagaaagagtggaagtgcgcggtgaagcattt
ttacccttggaagtgtttaagcaaatcaacgaagaacggcaaaaagcaggcgaacaatta
tttgctaacccccgcaacgccgccgcagggacactcagacagttagactcgcgcattgtg
gcgcgacgacgattagatttttttgcttacactttgcatattccggggatggatgatgcg
agtattgctaatacccaatgggaagccttggaattattacaaaaaatgggttttcgggta
aatcctaatcatcaactgtgtgagtctttggctgaagtcgcagaatactataaatactgg
gatacggaaagattgaatttaccctacatgaccgatggtgtagtggtaaagttgaatgct
tttaaactgcaagaacaattagggtttacccaaaaattcccgcgctgggcggtagcgttg
aagtacccagcggaagaagcacccacccgtgtggaaaatattgcggtgaatgttggtaga
actggggcgttaacaccgttggcagagatgcgtccggtacaattggcggggacaacagtt
tctcgcgctaccttacataatagcgatcgcattgttcaattagacatccgcatcggtgat
actgtcattgttcgcaaagctggggaaattattcccgaagtggtgcgagtaattaaagaa
ctgcgtccggctgatactgtaccatttgttatgccttcccattgtcctgtttgcggtcaa
gaagtggtgcgagaatcaggagaagccgtaactcgttgcgtgaatgcttcttgtgcagct
attctcaaaggttccattgaacattgggttagccgggatgctttagatattaaaggtgtg
ggggaaaaattagtgcatcaactggtagataaaggtttggtgcattctgtcgctgatttg
tatgatttgacagaagcccaattatgtagtttagaaagaatgggggaaaaatcggcacag
aaattagtagatgcgatcgcccaatcaaaaaatcaaccttggcatcgggtattgtatggt
ttaggcattcgtcatgttggcagtgtgaatgcccaactcatcactgaaaaatatcccgcc
gttgagaaattagaaaccgccaaacaatcagacattgccggtatttatggcattggtgca
gaaatcgcccaatctgtttatcagtggtttcagattgatgccaatcaagctttaattgaa
cgcttaaaaaccgcaaatttacaattcgttgctgacgaaactacaaccattggtaatagt
catcaaaagtttgccggaaaaacttttgtggtgacaggcacattacccaccttaaagcgc
gatgaagctaaagcactcatccaaaaagctggcggtaaagtcacagattccgtcagtaaa
aaaactgattatttggtagtaggagaagatgctggttctaaattagagaaagcccaagct
ttgggaattactcagttaactgagacacagctattaaatatgttagaggtagagattaac
taa
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