Nostoc sp. UHCC 0870: L6494_09780
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Entry
L6494_09780 CDS
T11470
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nosc Nostoc sp. UHCC 0870
Pathway
nosc03030
DNA replication
nosc03410
Base excision repair
nosc03420
Nucleotide excision repair
nosc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nosc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L6494_09780 (ligA)
03410 Base excision repair
L6494_09780 (ligA)
03420 Nucleotide excision repair
L6494_09780 (ligA)
03430 Mismatch repair
L6494_09780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nosc03032
]
L6494_09780 (ligA)
03400 DNA repair and recombination proteins [BR:
nosc03400
]
L6494_09780 (ligA)
Enzymes [BR:
nosc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L6494_09780 (ligA)
DNA replication proteins [BR:
nosc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L6494_09780 (ligA)
DNA repair and recombination proteins [BR:
nosc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L6494_09780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L6494_09780 (ligA)
MMR (mismatch excision repair)
DNA ligase
L6494_09780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L6494_09780 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Auto_anti-p27
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UKO99963
LinkDB
All DBs
Position
complement(2242495..2244534)
Genome browser
AA seq
679 aa
AA seq
DB search
MIQIQSEVKRAHELRQLLQQASYAYYVLDAPIMEDVVYDQLYRELQQLEIEYPELVSPDS
PTQRVGERPATHFTSVRHNVPLYSLENAFNIDELQVWDQRWRRQVPPTDSAEYVTELKID
GSALALTYHNGVLVRGASRGDGEMGEDITQNVRTIRSIPLRLNFDGLENIEKVEVRGEAF
LPIEVFQYINERRQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHIPGMDDA
SIANTQWEALELLQKLGFRVNSQHKLCQSLAEVAEYYKYWDTERLNLPYLTDGVVVKLNS
FKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVELAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLKELRPPDTEPFIMPSHCPVCGQ
PVVRETGEAVTRCVNASCPAILKGSIEHWVSRDALDIKGVGEKLVHQLVDKGLVHSVADL
YNLTAEQLCVLERMGQKSAEKLIQAIAQSKNQPWSRVLYGLGIRHVGNVNAQLLTEKYRT
VEQLATAKQSDIAGIYGIGAEIAQSVYQWFRINANQTLIERLQTAGLQFVNTEEATTPNN
INQKLLGKTFVITGTLPTLKRDQAKALIQKAGGKVTESLSKKTDYLVVGEDAGSKLEKAQ
SLGIAQLTEAQLLEILPAN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaattcagtccgaagtcaaacgcgctcatgaactgcgccagttgttgcaacaa
gctagctatgcttattatgtcttggatgcaccaatcatggaagatgtcgtctatgaccag
ctgtatcgagaactgcaacaactagaaattgaatatccagaattagtatcacccgacagt
cctactcagcgcgtcggggaaagacctgctacacactttacctctgtacggcacaatgta
cccctgtatagtctagagaatgcctttaatattgatgagttgcaagtatgggatcagcgt
tggcgcagacaagtaccgccaacagactcagccgaatacgttacagaactgaaaattgat
ggttcggccttggcgttgacatatcataatggcgtactagttaggggtgcaagtaggggt
gatggggagatgggggaagatatcacccaaaatgtgcgaactattcgctcaattccttta
cgtttaaattttgatgggttggaaaatatcgaaaaagtggaagtccggggtgaggctttc
ttaccaatagaagtttttcaatacatcaatgaacgccgacaaaaagccggagaacagtta
tttgctaatccccgtaacgccgccgcaggtacactcagacaactagactctcgcattgtg
gcgcgacgacggttagattttttcgcctacacgttgcacattcccggtatggatgacgct
agtattgctaatacccaatgggaagctttggaattgttgcaaaagttgggttttcgggtg
aactctcagcataagctttgccaatctttagcagaggtagctgaatactataaatactgg
gataccgaaagattaaatctaccctacctgacggatggggtagtggtgaagctaaattcc
tttaagctgcaagaacagttaggctttacgcaaaaattccctcggtgggctgtggctttg
aaatacccagccgaggaagcacccacccgtgtagaaaatattgccgtgaatgtaggacgc
accggagctttaacgccgttagcggaaatgcgtccagtggaattagcggggactactgta
tctcgcgctaccttacataatagcgatcgcatcgcccaattagatatccgcattggtgat
accgtcattgtccgcaaagctggggaaatcatcccggaagtcgtcagggtactgaaagaa
ctacgtccccctgataccgaaccttttattatgccgagtcattgtccagtgtgcggacag
cctgtggtgagggaaaccggggaagccgtgactcgctgcgtcaatgcttcctgtcccgct
attctcaaaggttcgatagaacattgggtgagtcgggatgctctagatattaaaggcgtg
ggggaaaaactggtgcatcaacttgtcgataaaggcttggtgcattccgttgcagattta
tataacttgacagcagagcaattatgtgtattagaaagaatgggacagaaatcagccgag
aaattgattcaggcgatcgcgcaatccaaaaaccaaccttggtcaagggtattatatggt
ttaggcatccgtcatgtgggcaatgttaatgctcaattactcaccgaaaagtatcgcaca
gtagaacagttagccaccgccaaacaatcagatatcgccgggatttatggtataggtgca
gaaattgctcaatctgtttatcaatggtttcgcatcaatgctaatcaaactttaatcgaa
cgtttgcaaacagcaggattacaatttgttaacacagaggaagcaacaacccctaataat
attaatcaaaaattgcttggtaagactttcgtaattactggaactttgcctacattaaag
cgcgatcaagccaaagccttaattcaaaaagctggtggaaaagtaacggaatcacttagt
aaaaaaacagattatttggttgtgggtgaggatgctggctctaagttagaaaaagcccaa
tctttgggaattgcacagttaactgaggcacagctattagaaattttacctgcaaattag
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