Novosphingobium sp. THN1: C7W88_11510
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Entry
C7W88_11510 CDS
T05635
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
not
Novosphingobium sp. THN1
Pathway
not03030
DNA replication
not03410
Base excision repair
not03420
Nucleotide excision repair
not03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7W88_11510
03410 Base excision repair
C7W88_11510
03420 Nucleotide excision repair
C7W88_11510
03430 Mismatch repair
C7W88_11510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
not03032
]
C7W88_11510
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_11510
Enzymes [BR:
not01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C7W88_11510
DNA replication proteins [BR:
not03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C7W88_11510
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C7W88_11510
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7W88_11510
MMR (mismatch excision repair)
DNA ligase
C7W88_11510
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7W88_11510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AXU19518
LinkDB
All DBs
Position
2330529..2332598
Genome browser
AA seq
689 aa
AA seq
DB search
MMIEISEAEAANELMRLARQIARHNRLYHAEDTPEISDAEYDALVRRNAELEAAFPHLIR
PDSPSAQVGHDVASSPLGKVSHEVRMMSLDNAFTDEEVEEFVARVCRFLALSESAEVVMT
AEDKIDGLSCSLRYENGRLVRAATRGDGQVGEDVTANVAHIADIPQELKGAGLFDVPAVF
EIRGEVYMAKADFLALNARQAEAGDKVFANPRNAAAGSLRQKDASVTASRPLRFLAHGWG
AASEVPAATQYEMMRRIAEWGVPVSPLLVRCSSAAEMVAHYRRIGEQRADLPYDIDGVVY
KVDRLDWQERLGFVAKAPRWGIAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLKPVLVG
GVTVTNVTLHNRDEIGRLGLRVGDRIVLQRAGDVIPQVVENLTREEPREAYHFPDHCPEC
QSEAVAEEGEVDVRCTGGLICPAQRVERLKHFVSRAALDIEGLGEKTIIEFFQLGWLESP
ADIFRLRKRRSDIVGREGWKDKSVDNLLAAIEGKRQPDAARLLFGLGIRHVGAVTARDLM
KRFVTLPALREAAIAAREGGEATADLLSIEGVGPVVVEALGDFFHEPHNIAVWEDLLSEV
SPPPYVVETKDSAVAGKTIVFTGKLETMSRDEAKAQAEALGARAAGSVSAKTDLVVAGPG
AGSKLKQAAALGIDVIDEASWAEIVKAAG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgagatttccgaagccgaagccgccaacgagctaatgcgcctcgcgcgccag
atcgccaggcacaaccggctttaccacgccgaggatacgcccgagatttcggacgccgag
tacgatgcgctggtgcgccgcaatgccgagcttgaggccgcgtttccgcacctcatccgg
cctgatagcccgagcgcccaggtcgggcacgatgtggcatcgtcgcccttgggcaaggtc
tcccacgaggttcgcatgatgagcctcgacaacgccttcaccgacgaggaagtcgaggag
tttgtcgcccgcgtttgccgtttcctcgcgctgtccgaaagcgcggaagtggtcatgacg
gcagaggacaagatcgacggcctgtcctgctcgctccgctacgagaacggcaggctggtc
cgcgccgccacgcgtggcgacgggcaggtgggcgaggacgtcacggccaacgtcgcgcat
atcgccgacattccgcaggagttgaagggcgcaggtctgttcgatgtgcccgctgtcttc
gagatccgcggcgaggtctacatggccaaggccgacttccttgcgctcaatgcccggcag
gccgaagcgggcgacaaggtctttgccaatccgcgcaatgccgccgccggttcgctgcgc
cagaaggacgcaagcgtcaccgccagccgccccttgcgcttcctcgcccacggctggggc
gcggcgagcgaggtgcccgccgccacacagtatgagatgatgcgcaggattgccgagtgg
ggcgtgccggtctcgccactgctggtccgctgctcatccgcggctgaaatggtcgcgcat
taccgccgcatcggcgaacagcgcgcagacttgccctatgacatcgatggcgtcgtctac
aaggtcgaccggctcgactggcaggagcggcttggcttcgtggccaaggccccgcgctgg
gggatcgcccacaagttcccggctgaacgggccgagacgacgctggaagccatcgatatc
caggttggccgcaccggcaagctgacgccggtgggtcgtctgaagccggtgctcgtcggc
ggcgttactgtcaccaacgtcacgctccacaatcgcgacgagatcgggcgtctgggcctg
cgcgtcggcgatcgcatcgtgctccagcgcgcgggcgacgtcatcccgcaggtggtcgag
aacctgacccgcgaggaaccgcgcgaagcctaccacttccccgaccactgccccgaatgc
cagtccgaagccgttgccgaggaaggcgaggtcgacgtgcgctgcaccggcggcctgatc
tgtccggcccagcgcgtcgaacgcctcaagcacttcgtcagccgcgccgcgctcgatatc
gaagggttgggcgagaagacgatcatcgagttcttccagctcggctggcttgaaagcccg
gctgacatcttccgcctgcgcaagcgccgcagtgacatcgtcgggcgcgaaggctggaag
gacaagtctgtggacaacctgttggcagcgatcgaagggaagcgccagccggacgcggcc
cgcctgctgttcggcctcggcatccgccacgtcggcgcggtcaccgcccgcgatctgatg
aagcgcttcgtcacgctgccggccctgcgcgaggcggccattgctgcacgggaaggcggg
gaagcgactgcagacctcctctccatcgaaggcgtcggcccggtcgtcgtcgaagcgctg
ggtgatttcttccacgaaccgcacaacatcgccgtctgggaagacctgctctcggaagtc
tccccaccgccttatgtggtcgagacaaaggacagcgccgtggccggcaagaccatcgtc
ttcaccggcaagctcgaaaccatgagccgcgatgaagccaaggcgcaggccgaagccctc
ggcgcgcgcgcggctggctcggtctcggccaagaccgacctcgtcgtggcaggacccggt
gcaggctccaagctgaagcaggccgccgcactcggcatcgacgtgatcgatgaagcctcc
tgggccgaaatcgtgaaggctgcgggctga
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