Nocardia sp. CS682: DMB37_10970
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Entry
DMB37_10970 CDS
T06040
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
noz
Nocardia sp. CS682
Pathway
noz03030
DNA replication
noz03410
Base excision repair
noz03420
Nucleotide excision repair
noz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DMB37_10970
03410 Base excision repair
DMB37_10970
03420 Nucleotide excision repair
DMB37_10970
03430 Mismatch repair
DMB37_10970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
noz03032
]
DMB37_10970
03400 DNA repair and recombination proteins [BR:
noz03400
]
DMB37_10970
Enzymes [BR:
noz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DMB37_10970
DNA replication proteins [BR:
noz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DMB37_10970
DNA repair and recombination proteins [BR:
noz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DMB37_10970
NER (nucleotide excision repair)
GGR (global genome repair) factors
DMB37_10970
MMR (mismatch excision repair)
DNA ligase
DMB37_10970
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DMB37_10970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QBS40565
LinkDB
All DBs
Position
complement(2441568..2443691)
Genome browser
AA seq
707 aa
AA seq
DB search
MSESGAVGKDASPATAEQRVEWQRLADEVREHQFRYYVRDAPIISDGEFDALLRRLQAME
EQHPDLLTPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFDFDELRTWASRVEAETGPNL
HYLCEVKIDGVALNLVYENGRLVRGATRGDGRTGEDVTLNARTIEDIPGELIPTDEFPFP
TLLEVRGEAYMRLEDFETLNASIVAEGKPPYANPRNTAAGSLRQKDPSVTARRRLRMICH
GFGRIEGYTPASQHEAYRALAAWGLPVSEHTKLVQGIDAVIERVEYWGEHRHDIEHEIDG
QVIKIDEMALQRRLGSTSRAPRWAIAYKYPPEEATTKLLNIAVNVGRTGRVTPFAVMEPV
SIAGSTVSMATLHNASEVKRKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGDEHEFVMPT
HCPECGTELAPQKEGDADIRCPNQQYCPAQLRERVYHVAGRGAFDIESLGYEAANDLLKS
GAITDEGDLFDLDEATLLTTTLFVNKDGGLSANGKRLLENLATAKNRPLWRVLVALSIRH
VGPTAARVLAREFGSLDRIQDASAEELAAADGVGPTIAAAVAEWFTVDWHRAIVDKWRAA
GVRMADERDESIARTLEGLSIVVTGSLEGFSRDGAKEAILMRGGKAAGSVSKKTAFVVIG
DSPGTKAAKAEELGVPILDEAGFRLLLESGPEAVAPAAEDADAEAEE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagagcggtgcggtagggaaagacgcgagcccggcgacggcggagcagcgcgtc
gagtggcagcggctggcggacgaggtgcgcgagcatcagttccgctactacgtgcgggac
gcaccgatcatctccgatggggagttcgatgcgttgctgcgccggttgcaggcgatggag
gagcagcatcccgatctgctcacgccggactcgccgacccagctggtcggtggcgggttc
gctaccgatttcaccgccgtcgatcacctcgagcggatgttgtcgctggacaacgtgttc
gacttcgacgagctgcgcacctgggcgagccgggtggaggccgagaccgggccgaacctg
cactacctgtgcgaggtgaagatcgacggtgtcgcgctgaacctggtctacgagaacggg
cggctggtgcgcggcgccacccgcggcgacgggcgcaccggcgaggacgtcaccctgaac
gcgcgcaccatcgaagacatccccggcgagctgatacccaccgacgaatttcctttcccc
actctgctcgaggtgcgcggcgaggcgtacatgcggctcgaggacttcgagacgctcaac
gcgtcgatcgtggccgagggcaagccgccgtacgcgaatccgcgcaacacggcggccggc
tcgctgcgacagaaggacccgtcggtcaccgcgcgccgcaggctgcggatgatctgccac
gggttcggccggatcgagggctacaccccggcctcgcagcacgaggcctaccgcgcgctc
gccgcgtggggcctgccggtgtccgagcacaccaagctggtgcagggcatcgacgccgtc
atcgagcgcgtcgaatactggggcgagcaccgccacgatatcgagcacgagatcgatggc
caggtgatcaaaatcgacgagatggcgttgcaacgccgcctcggttccacctcacgagcc
ccgcgctgggcgatcgcctacaagtacccgcccgaggaggcgacgaccaagctgctgaac
atcgcggtaaacgtcggccgcaccggccgggtcaccccgttcgcggtgatggagccggtc
tccatcgcaggctcgaccgtttcgatggccacgctgcacaacgcctcggaggtcaaacgc
aagggcgtgctgatcggcgacacggtcaccatccgcaaggcgggcgatgtgatcccggag
gtgctcggcccggtggtcgacgcccgcaccggtgacgaacacgaattcgtgatgcccacg
cactgtccggaatgcggcaccgagctggcgccgcagaaggagggtgacgccgacatccgc
tgccccaaccagcagtactgcccggcacagctgcgggagcgggtctatcacgtcgcaggc
cgcggtgcgttcgatatcgagtcgctcggctacgaagccgcgaacgatctgctgaagtcg
ggtgcgatcaccgacgagggtgatctgttcgacctcgatgaggcgacgctgctcaccacc
acgttgttcgtcaacaaggacggcggtctgtccgccaacggcaaacggctgctggagaac
ctggccacggccaagaatcggccgctgtggcgggtgctcgtcgcactgtccatccggcac
gtcggtcctaccgccgctcgggtactcgcccgcgaattcggcagcctcgaccggatccag
gacgcctcggccgaggaactggctgctgccgacggcgtcgggcccaccattgcggccgcg
gtggcggaatggttcaccgtcgattggcatcgtgcgatcgtggacaagtggcgcgcggcg
ggcgtgcggatggccgatgagcgcgacgagtccatcgcgcgcacgctcgaaggtctgtcg
atcgtggtgaccgggtcgctggaggggttctcgcgcgacggagccaaggaggcgatcctg
atgcgcggcgggaaggccgccggatcggtgtcgaagaagactgcgttcgtggtgatcggt
gattcgccggggacgaaggcggcgaaggcggaggagctcggcgtgccgattctcgacgaa
gccggcttccgattgctgctggaatcggggccggaggcggtcgcaccagccgcggaagac
gccgatgctgaagcggaagaataa
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