Nothoprocta perdicaria (Chilean tinamou): 112943420
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Entry
112943420 CDS
T07556
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Pathway
npd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112943420 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npd03400
]
112943420 (LIG4)
Enzymes [BR:
npd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112943420 (LIG4)
DNA repair and recombination proteins [BR:
npd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112943420 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
112943420
NCBI-ProteinID:
XP_025890355
Ensembl:
ENSNPEG00000011330
UniProt:
A0A8C7EEW8
LinkDB
All DBs
Position
Unknown
AA seq
914 aa
AA seq
DB search
MASTPASQPSAKKTVASQVPFADLCCTLERMQTCKSRPEKTKYFKDFLDSWRRFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRCPKQGRLTIEQVNELLDAIANNNAAKNKGLLKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRELHDPTVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQKFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHKVFKSSVQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EESDLQTCYCVFDVLMVNNQKLGHETLSKRYEILSDXFTPVAGRIHAVHKTXARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIIGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPSVFHSICRIGSGYTMKELYDLGLKLAKHWKPYXRKDPP
CNILCGTEKPEVYIEPCNSVIVQVKAAEIVDSDMYKTDCTLRFPRIERIREDKEWYECMT
SDMLEHLRSKAEGKLASKHLHIDDDDDEPQEKKKKTIPKVKKIIGIAEQFKAPDLSNINK
VSNVFEDVEFCVMTGTVKHSKSELESRIAEFGGSVVQNPGPDTYCVIVGTENVRVKNIIA
SNRYDVVKAEWLLQCFQTKMLVPWQPAFMIHMCPDTKEHFARAYDCYGDSYTVDADVAQL
KEVFSRMEDXKKMMPLDVIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTR
LSIRALELRFYGAXVVPRLEEGVSHVLIGEDHSRVKEIKALRRTFAKKFKIVSELWVTDS
VEEALPKNENQYLI
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacacctgcttcacagccttctgctaagaaaactgtagcctctcaggtgcca
tttgcggatctgtgctgtactctggagcgaatgcagacgtgtaaatctcggccggagaag
accaagtatttcaaggatttcctggattcctggaggagattccacgatgctcttcatcaa
aaggagaaagatgtcactgattctttttacccagcaatgcgacttattcttccgcagttg
gaaagagaaaggatggcttatgggattaaagaaaccatgcttgcaaagctctatattgaa
ttgcttaatttgcccaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggagacgctggagattttgcaatgattgcttactttgtcttaaaacct
aggtgcccaaaacaaggtagactgacaatagagcaggtcaatgaactcttagatgcaata
gctaataataatgctgccaaaaacaagggtctattaaagaaaagtctccttcagttaatt
actcagagctcagcactggaacaaaaatggcttatccggatgattataaaggatctgaaa
cttggtgttagtcaacaaaccatattttccatttttcatcctgatgctgctgaattacac
aatgtcacaaccgatttggaaaaagtctgcagagaactgcatgatccaactgtctcactt
agtgatgtctccatcatgttattttctgcctttaaaccaatgcttgctgctatcgctgat
gtccagcaaattgagaaacaaatgaataatcagaaattctacatagaaactaaactggat
ggtgagcgtatgcagatgcacaaagatggagatgtatacaaatatttttcccgaaatggg
tttgactacactcagcagtttggtgcttcaccccttgaaggttcattaactccatttatt
cataaagtatttaaaagcagcgtgcaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagactcaaacgttcatgcaaaaaggaaacaaatttgatataaaaagaatggtg
gaggaatctgacctgcagacctgctactgtgtatttgatgtattaatggttaacaaccag
aagttgggccatgaaacactaagcaaaaggtatgaaatcttgagtgacstatttacccca
gtagcaggcagaatacatgctgtacataaaacamgtgccagaacaagaaaagaagtaatc
gatgctttaaatgaagcgatagataacagagaggaaggaattatggtgaaagatcccatg
tccacttacaagcctgacaaacgtggggaaggctggctaaaaatcaagccggaatatgtc
agcgggttgatggatgagctagacctcctgatcattggcgggtactggggaaagggctcg
cgcggtggaatgatgtctcactttctgtgcgctgttgcggagactccacctccaaatgaa
aaacctagtgttttccactctatttgccgcatcggctctggttatactatgaaggaattg
tatgatctaggtttgaaactggctaaacactggaagccctatcrtaggaaggaccctccg
tgcaacattttgtgtggaactgaaaaacctgaagtgtacattgaaccttgtaactctgta
atagttcaggttaaggctgctgagattgtcgacagtgatatgtataaaactgactgtaca
ttgagattcccccgaattgagagaataagagaggacaaggaatggtatgaatgtatgact
tcagatatgctagagcatctyagaagcaaagcagaagggaaactggcctctaaacacctt
catatagatgatgatgatgatgagcctcaagagaagaaaaagaaaaccataccaaaggtg
aaaaagataattggaatagctgagcagtttaaagcccctgatctttctaatataaacaag
gtttcaaatgtatttgaagatgttgagttttgtgttatgacaggaacggtaaaacactcg
aagtccgagttggaaagcagaatagctgaatttggtggcagtgtggtacagaaccctgga
ccagacacctactgtgtcattgtaggaacagagaatgtccgagtgaaaaacatcattgct
tccaacagatacgatgtggtcaaggcagagtggctcctccagtgttttcaaaccaaaatg
ctcgtaccttggcagcctgcctttatgattcacatgtgtcctgacacaaaggaacatttt
gctcgtgcatatgattgttacggagacagctacacagtggatgcagatgttgcacaactg
aaggaagtgttctcaaggatggaagataakaagaagatgatgcctttggatgtgattgct
gaattagaagaacgttattcatggaacagctgccaactcagtatattcagaggaaacact
atttatgtggactgttatgctgttgttaatgagcccagaacaaaaatccatggaacaaga
ctatcaattagagcyttggagctccgattttatggtgcargagtagtccctcgcttagaa
gagggcgtgtcccatgtccttataggagaagatcactcccgggtaaaagagattaaagct
ctgaggagaacatttgctaaaaagtttaaaattgtctctgagctgtgggtaactgactca
gtagaagaagcactaccaaagaatgaaaatcaatacctgatttga
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integrated database retrieval system
