Neisseria perflava: LPB400_08690
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Entry
LPB400_08690 CDS
T07577
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npf
Neisseria perflava
Pathway
npf03030
DNA replication
npf03410
Base excision repair
npf03420
Nucleotide excision repair
npf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB400_08690 (ligA)
03410 Base excision repair
LPB400_08690 (ligA)
03420 Nucleotide excision repair
LPB400_08690 (ligA)
03430 Mismatch repair
LPB400_08690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npf03032
]
LPB400_08690 (ligA)
03400 DNA repair and recombination proteins [BR:
npf03400
]
LPB400_08690 (ligA)
Enzymes [BR:
npf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LPB400_08690 (ligA)
DNA replication proteins [BR:
npf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPB400_08690 (ligA)
DNA repair and recombination proteins [BR:
npf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LPB400_08690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPB400_08690 (ligA)
MMR (mismatch excision repair)
DNA ligase
LPB400_08690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB400_08690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QXW90080
UniProt:
A0ABD7EWS0
LinkDB
All DBs
Position
1810190..1812658
Genome browser
AA seq
822 aa
AA seq
DB search
MNPTAQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQ
RVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKPEYVI
EPKFDGLAISLLYRDGVLIQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEIRG
EVLMLKADFAALNERQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQQG
GFIAEEHLQELSYCKELGFSLPDGNFGCFPNIDEVLAFYEKMQQKRPTLPYEIDGMVVKV
NSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV
TVTNATLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETNISVSDGLQDD
LFAETPSKTQAEPLHKPYRLPTHCPICHSEIEREEDEAVARCSGGMLCQAQRAQGLIHFA
SRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKASANEEEPSNSEV
EDFESETGNALLAKNIKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLA
QAFGTLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGVAPQSQAVT
IPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQTDKALPADWQIWRSKPQNA
ALLENMKTFFAQTLSNLQDETISDGINEAIAGKTFVLTGTLPTLKRDQAQAMIEAAGGKV
SGSVSKKTDYVVAGEAAGSKLEKAQTLGVVVLSEEELLTLLG
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgaccgcacaacgtatcaaatacctgaccgacctcctcaaccgctacgcctac
gaatattacaccctagacgcacccagcgtacccgatgccgaatacgataaattgttccgc
gagctcgaagcattggagctaaatcatcctgagttgaaactgcccgacagcccgacccag
cgcgtcggcggcgagcctttggcaggctttgatgaagtgcgtcatgaagtgcctatgttg
tcactgaccaacgccttctcaccgcaagatgaaaacggcgtgttcgatcatgccgaaatg
tacgctttcgatgagcgcgttcgtggtggtttaaatggagaaaaaccggaatacgttatt
gagcctaaatttgacggtctggccatcagcctgctgtaccgcgacggcgtattgattcaa
gcggcaacccgtggcgacggcacaacaggcgaagacgttacccaaaacgtcaaaaccgta
tccaacatccccctgcgcctgcatggagaaaatatccccgagcttatcgaaatacgcggc
gaagtactgatgctcaaagccgattttgctgccttgaacgaacgacaggctgaaaacgga
caaaaacctttcgccaatccgcgcaatgccgccgccggcagcctgcgccaactcgattcg
cgcattacggcacaacgcaaactgcatttcttcccctattccattgcccgacaacaaggc
ggttttatcgcagaagaacacctgcaagagctgagctactgtaaagagcttggcttcagt
ctgcccgatggcaatttcggctgtttcccaaatatcgacgaagtattggcgttttacgaa
aaaatgcagcaaaaacgccctactttaccttatgaaatcgacggcatggtggtcaaagtc
aacagtctggcacaacaagaaaaactgggtttcatctcacgcgcaccacgctgggccatt
gcccacaaatttcctgccgaagaagcattgaccattgtcgaagccattgatgtacaaatc
gggcgcaccggcgcagtaaccccggttgcccgcctgcaacctgtattcgtcggcggcgtt
accgttaccaacgctaccctgcacaatcaggacgaagtatcgcgtaaagacgtacgcgtt
ggcgataccgtcgttgtgcgccgtgccggagacgtcattcccgaggtggtgcgcgtaatt
tttgaacgccgcccaatgcaggagaccaatatttccgtttcagacggcctgcaagacgat
ttgtttgccgaaacaccttctaaaacgcaagccgaaccgcttcacaaaccctaccgcctg
cccacccattgccctatctgtcacagcgaaatcgaacgcgaagaagacgaagcagttgcc
cggtgtagcggcggtatgctttgccaggctcaacgcgcgcaaggtttaatccacttcgcc
tctcgcaaagccatggacatcgacggacttggacaaaaacaaatcgagcagctggtagcg
caagatttggttcgtcatttcgccgacctctaccgtctcgatattccaaccttacagaaa
atgaaagaaacggcggataaagcatcggccaatgaggaagaaccatcaaacagtgaggtt
gaagactttgaaagcgagaccggtaatgccctgcttgccaaaaacattaaaaaacagccg
accaaatgggcggaaaacatccttgcaggcatagaagccagcaaaacgcccgaacttgcc
cgcttcctttttgccctcggcatccgtcacgtcggcgaacgcaccgccaaaacgttagca
caggcattcggcacactggaacacgtccgccatgcacccgaacccatcctcgcctgcttg
cccgatatcggcacggtagttgcccactccatcgcccacttttttgctcaagaagcacaa
caggcgatgatagacgaactactggctgtaggtgttgccccgcaaagccaggctgtcact
atcccaccgttacgccatgccgaaccgcaacgctggattgcccgcctgcctgattttaaa
atcagcgaaaccaaagcactggccttgtgggagcttgccggacaaagcatagaaggtttg
caaaccgacaaagcgttgcctgccgattggcaaatatggcgcagtaaaccgcaaaacgca
gcccttcttgaaaatatgaaaactttctttgctcaaacgctgtctaatcttcaagatgaa
actatttcagacggcattaacgaggctatagcaggtaaaacctttgtattaacagggact
ttacccacgctcaaacgcgaccaagcccaagccatgattgaggctgccggcggtaaagtt
tctggtagcgtatccaaaaaaaccgactacgttgtcgccggagaagccgcaggcagtaaa
ttggaaaaagcccaaacgttgggcgtggtcgtattgagcgaagaagaattactgacgttg
ctaggataa
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