Natronomonas pharaonis: NP_0882A
Help
Entry
NP_0882A CDS
T00279
Symbol
ligA
Name
(GenBank) DNA ligase (NAD)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nph
Natronomonas pharaonis
Pathway
nph03030
DNA replication
nph03410
Base excision repair
nph03420
Nucleotide excision repair
nph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP_0882A (ligA)
03410 Base excision repair
NP_0882A (ligA)
03420 Nucleotide excision repair
NP_0882A (ligA)
03430 Mismatch repair
NP_0882A (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nph03032
]
NP_0882A (ligA)
03400 DNA repair and recombination proteins [BR:
nph03400
]
NP_0882A (ligA)
Enzymes [BR:
nph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NP_0882A (ligA)
DNA replication proteins [BR:
nph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NP_0882A (ligA)
DNA repair and recombination proteins [BR:
nph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NP_0882A (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NP_0882A (ligA)
MMR (mismatch excision repair)
DNA ligase
NP_0882A (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NP_0882A (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
CAI48532
UniProt:
Q3ITK1
LinkDB
All DBs
Position
complement(440031..442106)
Genome browser
AA seq
691 aa
AA seq
DB search
MEEPEDNPYIRDPPLDFEPVDELDAASATRQVETLREAIRFHDYRYYQLADPVISDRAYD
QLFERLERLESKFDRSSATSPTQRVGGEPLDELETVEHVAPMRSIESSVEVDDIRDFDTR
IQERLAAAGYEGPVRYLCEPKFDGLSVELVYEEGELSRAATRGDGQEGDDVTANVRTIRS
VPLTLDGDCPSFLAVRGEIFMPKDAFQEYNRERLERGEEPFSNPRNAAAGTLRQLDPSVT
AERPLDCFVFDILDDGGRGFETRMAEHEAVESWGFQVDDHTARVDDIEAAIAFREEMLDG
RASLDYEIDGIVIKLDRKDACALLGATARAPRWAYAYKFPARTEETTVRDIVLQVGRTGR
LTPVALLDPVEVSGVEVSRATLHNPQQIAELGVGIGDRVTLKRAGDVIPYIEAVVDSERE
AHFEFPDRCPVCESPLERDGPLAYCTGGVACPAQLRRAVEHYASRSGLDIEGLGESAVDQ
LVDAGLVERLPDLYDLSVADVAELDGWGRTSAENLLEELEASTEPPLPAFLSALGIPGVG
TTTAADIAREFGTLDAVMDATAEELRAVDGIGPTLGGEIAEFFDSDRNQQVIEQLRKRGV
DPEPAETAGDALSGQTFVFTGSLDGLTREEAHELVETSGGTATGSVSGNTDYLVVGDSPG
QRKREAANEHGVETLSQSDFESLLESHGIEI
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaggagccggaggacaacccctacattcgggacccaccgctggatttcgagccggtc
gacgaactcgacgcggcgagcgcaacgcggcaggtcgagacgcttcgtgaggcgattcgg
ttccacgattaccgctactatcagcttgcggacccagttatctcggaccgagcctacgac
caactattcgagcggttggagaggctcgaatcgaagttcgaccgcagttcggcgacgagc
ccgacccaacgggttggcggcgagccgctggacgaactggagacggtcgaacacgtcgcg
ccgatgcgttctatcgaatcgagcgtcgaggtcgacgacatccgtgacttcgatacccgt
atccaagagcggctcgcggcagccggctacgagggaccggttcggtatctctgtgagccg
aaatttgacggcctctccgtcgagctcgtctacgaggagggcgaactcagccgcgcagcg
acgcgcggcgatgggcaggaaggcgacgatgtcacggccaacgtccggacgattcggtcg
gtgccgctgacgctcgatggcgactgtccgtcgtttctggccgttcgcggggagattttc
atgccgaaagacgcctttcaggagtacaatcgcgaacggctcgaacggggcgaggagccg
ttttcgaacccgcgaaacgccgccgcgggaacactgcgtcagctcgacccatcagtgacc
gcggaacggccgctggactgtttcgtcttcgatatcctcgacgacggcgggcgcggcttc
gagacgcggatggcggaacacgaagccgtcgaaagctgggggtttcaggttgatgaccac
accgcgcgggttgacgatatcgaggcagccattgcgttccgcgaggagatgctggacggg
cgggcgtcgctagactacgaaatcgacggcatcgtcatcaagcttgaccggaaggatgcg
tgtgcgctgctgggcgcaacagcccgagcaccgcggtgggcctacgcctacaagttcccc
gcgcgaaccgaggagacaacggttcgtgatatcgtccttcaggttggacgaaccggtcgg
ctgacaccggtcgcgttgctcgaccccgtcgaggtttcgggagtagaagtctcgcgggca
acgctgcacaacccacaacagatagccgaactcggcgttggcatcggcgaccgggtcacg
ctgaagcgggcgggcgatgttatcccatacatcgaggcagtggtcgactccgagagggag
gcccacttcgagttcccggaccgctgtcccgtctgtgagagtccactcgagcgcgacgga
ccgttggcgtactgtaccggcggggtcgcctgcccggcacagctccggcgtgccgtcgaa
cattacgcctctcgaagcggcctcgatatcgagggcctcggcgagagcgcggtcgaccag
ctcgtcgacgccgggctcgtcgagcggctccccgacctctacgacctgagcgttgcggat
gtggccgagctggacggctggggaaggacaagcgccgagaacctccttgaggagctagag
gcgagcaccgaaccgccgcttccagcgtttctgtcggcgctcggcatccccggcgtcgga
acaaccactgccgccgacatcgcccgtgaattcggcacgctggatgccgtcatggatgcg
acggccgaagagttacgagcggtagacggcatcgggccgacactggggggcgaaatcgct
gagttctttgacagcgaccgcaaccagcaggtcatcgaacaacttcggaagcgcggcgtc
gacccggagccggcggagactgccggggacgcgctgtcaggacaaacgtttgtgttcacc
ggctcgctcgatgggctgactcgcgaagaggcccacgagctggtggagacgagcggtggg
acggcgaccgggagcgtctcgggcaacacggattacctcgtggtcggtgacagccccggg
cagcgcaagcgggaagccgccaacgaacacggcgttgagacgctcagtcagtccgacttc
gagtcgttgcttgaatcccacggcatcgaaatatag
DBGET
integrated database retrieval system
