Neorhizobium petrolearium: QEO92_11165
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Entry
QEO92_11165 CDS
T09021
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npm
Neorhizobium petrolearium
Pathway
npm03030
DNA replication
npm03410
Base excision repair
npm03420
Nucleotide excision repair
npm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QEO92_11165 (ligA)
03410 Base excision repair
QEO92_11165 (ligA)
03420 Nucleotide excision repair
QEO92_11165 (ligA)
03430 Mismatch repair
QEO92_11165 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npm03032
]
QEO92_11165 (ligA)
03400 DNA repair and recombination proteins [BR:
npm03400
]
QEO92_11165 (ligA)
Enzymes [BR:
npm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QEO92_11165 (ligA)
DNA replication proteins [BR:
npm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QEO92_11165 (ligA)
DNA repair and recombination proteins [BR:
npm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QEO92_11165 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QEO92_11165 (ligA)
MMR (mismatch excision repair)
DNA ligase
QEO92_11165 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QEO92_11165 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
HHH_5
DUF6149
RNA_ligase
zf-NADH-PPase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WGI71172
LinkDB
All DBs
Position
complement(2193172..2195589)
Genome browser
AA seq
805 aa
AA seq
DB search
MSVEKTPVEDLTEEQAAAELAYLAAEIARHDELYHGHDAPEISDADYDALKRRNDAIEKR
FPKLIRADSPSIRVGAAPLPTFAPITHARPMLSLDNTFSDDDVRDFVNSVYRFLGQLPDG
SIAFTAEPKIDGLSMSIRYEHGRLVNAATRGDGTTGENVTENIRTIKEIPNRLPTGVPDV
IEVRGEVYMRKSDFLALNAQMEAEGKQTYVNPRNTAAGSLRQLDARVTASRNLKFFAYAW
GEMSEMPADTQMGMVEKFKEWGFPVNPLMKRLNSVDDIIDHYKQIGLKRPDLDYEIDGVV
YKVDRLDLQGRLGFRSRSPRWATAHKFPAEQAFTRVERIDIQVGRTGALTPVARLTPVTV
GGVVVTNATLHNEDYIKGIGNSGERIREEEHDIRIGDTVIVQRAGDVIPQVLDVVMEKRP
PDAVPYEFPKKCPVCGSHAVREEGESVRRCTGGLICSAQQIERLRHFVSRDAFDIEGFGD
QYVELFFAAGLLKTPADVFRLHLHSDEVKKAILEYRELLQREREERTGKRRKKVSAEDSR
SFEGVDKLFASIDKRRHISFERLLFGLGIRHIGEVTAKALARRYNKPLDFLAAIIAAADG
RPGSAWHILSSVDGIGGVTRDALIASVGSSAPAGFGLSHESWLSGVGLNKKQKQNLLSRF
GDAEGVYRVVLAASKGAPNPAYKDLANQKDVGEVAADALIDFVTETHNREAVDDLLSYLD
VFFDQPASSSSELSGKTVVFTGNLEKMTRNEAKATAERLGARVSGSVSGKTDLVIAGPGA
GSKLADAQKHGVKIITEDEWLSLIE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcgaaaaaacgcccgtcgaagacctgaccgaagaacaggccgcagccgagctc
gcttatctggcggccgagatcgcccgtcatgacgagctctatcacggccacgatgcgcct
gagatttccgatgctgattatgacgcgctgaagcggcgcaacgatgcgatcgagaagcgg
tttccgaagctgatccgggccgacagcccgtcgatccgcgtcggcgccgcacctttgccg
acattcgcgccgatcacccatgcgcggccgatgctgtcgctcgacaacacgttttccgac
gacgacgtgcgcgacttcgtcaactccgtctaccgtttcctcggacagcttccggatggt
tccatcgcgtttacggcggagcccaagatcgacgggctctccatgtcgatccgttacgag
cacgggcggctcgtcaatgcagcgacgcgcggagacggcacgaccggcgaaaacgttacc
gagaacatcaggaccatcaaggaaatccccaaccgcctgccgaccggcgtgccggacgtc
atcgaggtgcgcggcgaggtttatatgcgcaagagcgactttctggcgctcaacgcgcag
atggaagcggaaggcaagcagacctatgtcaacccgcgcaacaccgccgccggatcgctt
cgccagctcgacgccagagtgacggccagccgaaacctgaaattcttcgcctatgcctgg
ggcgagatgtcggaaatgccggccgacacccagatgggcatggtggagaaattcaaggaa
tgggggtttccggtcaacccgctgatgaagcggttaaactcggttgatgacattatcgac
cattacaagcagatcgggctgaagcgtccggacctcgattacgagattgacggggtggtc
tacaaggttgaccggctcgacctgcagggaaggctcggcttccgctcgcgctcaccgcgc
tgggcgacggcgcacaagttcccggccgagcaggcattcacccgtgtggagaggatcgat
atccaggtcgggcggaccggcgcgctgacacccgtcgcgcgtctcacgcccgtcaccgtc
ggcggcgtggtggtcaccaacgcgacgctgcacaacgaggattacatcaagggcatcggc
aattccggtgagcgcatccgcgaggaggagcacgatatccgtatcggagacacggtcatc
gtgcagcgggccggcgacgtcatcccgcaggtgctcgacgtcgtcatggaaaaacgtcct
cctgacgccgtgccttacgagtttccgaaaaaatgtccggtctgcggcagccatgcggtg
cgggaagaaggtgagtctgttcgaagatgcacgggcggattaatttgctcggctcaacag
atcgaacgtcttcgtcatttcgtttcgcgcgatgcattcgacatcgaggggtttggagat
caatatgtcgagcttttcttcgctgcgggtctactcaagacgcctgctgatgttttccgc
cttcacctgcatagcgacgaggtgaagaaagctattctggaatatcgggagctccttcag
cgtgaacgtgaagagcgcacgggcaagcggcggaagaaagtgtccgcggaagattcgcga
tctttcgagggcgtggataagctttttgcttccatcgataagaggcggcatatatccttt
gagcgcctgctttttggtctgggcattcgtcacatcggcgaagtgactgcaaaggccctt
gctcggcgttacaataagcctttagacttcctagcggcaattatcgcggcagccgacgga
cgaccaggctctgcttggcatatattgtcctctgtggatggcattggcggtgtcacacgg
gatgcactgatcgcctccgttggatcgagtgctccggccggtttcgggctatctcacgag
agctggctctctggcgttggcctcaacaaaaaacaaaagcagaatcttctaagtcgattt
ggcgatgcggaaggagtctatagagtggttttggctgcttccaagggagcgccaaatcct
gcttataaagatttggctaaccagaaggatgttggagaggtcgccgcagatgctttgatt
gactttgtcactgagacacacaatcgagaggccgtggatgacctcctcagctatctcgat
gttttctttgatcagccggcgtcctccagcagcgagttgtcaggaaagacggtggttttt
acgggcaacctggaaaagatgacgcgtaacgaagcaaaagcaactgccgagcggcttggt
gcacgtgtttcgggttctgtttccgggaaaacggatcttgttattgcgggaccaggcgct
ggctcgaaactggccgacgctcaaaaacacggggtcaagatcataactgaagacgaatgg
ttgtcgctgattgagtag
DBGET
integrated database retrieval system
