Novosphingobium pentaromativorans: JI59_01215
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Entry
JI59_01215 CDS
T03399
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npn
Novosphingobium pentaromativorans
Pathway
npn03030
DNA replication
npn03410
Base excision repair
npn03420
Nucleotide excision repair
npn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI59_01215
03410 Base excision repair
JI59_01215
03420 Nucleotide excision repair
JI59_01215
03430 Mismatch repair
JI59_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npn03032
]
JI59_01215
03400 DNA repair and recombination proteins [BR:
npn03400
]
JI59_01215
Enzymes [BR:
npn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JI59_01215
DNA replication proteins [BR:
npn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JI59_01215
DNA repair and recombination proteins [BR:
npn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JI59_01215
NER (nucleotide excision repair)
GGR (global genome repair) factors
JI59_01215
MMR (mismatch excision repair)
DNA ligase
JI59_01215
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JI59_01215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIT78526
UniProt:
G6EHM9
LinkDB
All DBs
Position
274351..276492
Genome browser
AA seq
713 aa
AA seq
DB search
MASDSESITEAEAANELMRLARQINRANRLYHAEDAPEIPDAEYDALVRRNAELEAAFPH
LVRADSPSNQVGHEVAASPLSKVRHEVRMMSLDNAFTDEEVGEFVTRVRRFLSLSADEPV
VMTAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTANVAHIPDIVQELQGEGVPEVF
EVRGEVYMEKAAFLALNQALMEDARKAAEARGETLDESKVRQFANPRNAAAGSLRQKDAS
VTARRHLRFWAHGWGAASEVPGESQHEVVRRIEAWGLPVSPQFRQCRSLDEMLAAYREIR
DGRPDLPFEIDGVVYKVDRLDWQQRLGFVAKAPRWAMAHKFPAERAETTLESIDIQVGRT
GKLTPVGRLKPVLVGGVTVTNVTLHNRDEIARLGVRPGDTVVLQRAGDVIPQVVENLTRE
AERAPFEFPDHCPECGSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSRAALDIEGLGE
KTIDEFFAKGWLESPADIFRLKDRRDEILALEGWKDKSVENLLSAVESKRAPDAARLLFG
LGIRHVGAVTARDLMKRFETLPALRAIAENAHVKDGEEQAAQASEAYAELTSIDGIGPAV
VEALGDFFHEEHNREVWDDLLSLVSPPPYVVETRDSAVAGKTVVFTGKLETMSRDEAKAQ
AERLGAKASGSVSPKTDLVVAGPGAGSKLKKAADLGIEVIDEAQWAEIVKAAG
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtggcatctgacagcgaatcgatcaccgaagccgaagccgccaacgaactgatgcgcctt
gcgcgccagatcaatcgcgccaaccgcctctatcatgccgaggatgcaccggagattccc
gacgccgagtacgacgccctcgtgcgccgcaatgcggaactggaagcggcctttccccat
cttgtgagagcggacagtccgtcgaaccaggtcggtcacgaagtcgcggcctcgcccctg
tccaaagttcgtcatgaggttcgcatgatgagcctcgacaacgccttcaccgacgaggaa
gtgggcgaattcgtcacgcgcgtgcgacgttttctctcgctctcggcggatgagccggtg
gtcatgaccgccgaggacaagatcgacggtctgtcctgctcgctgcgttacgagaacggc
aagctggtccgcgcggcgacgcgcggcgacggacaggtgggcgaagacgtcaccgccaat
gtcgcccacatcccggacatcgtgcaggagttgcagggcgaaggcgtacccgaggtcttc
gaggtgcgcggcgaagtctacatggaaaaggccgccttcctcgcactcaaccaggctctg
atggaggatgcgcgcaaggctgccgaagccaggggcgagacgctcgacgaaagcaaggtt
cgccagttcgcgaacccgcgcaatgccgccgccggttcattgcgccagaaggacgccagc
gtcacagcccggcgtcacttgcgcttctgggcgcatggctggggtgctgccagcgaagtg
ccgggcgaaagccagcatgaggtcgtgcgcaggatcgaggcctggggcctgccggtctct
ccccagttccgtcagtgccgctcgctcgacgaaatgctggctgcctaccgcgagatccgt
gacggtcgccccgacctgccgttcgagatcgacggcgtcgtctacaaggtcgatcggctc
gattggcagcagcgccttggtttcgtggcgaaggcgccgcgctgggccatggcgcacaag
tttcccgccgagcgggccgaaacgacgctggaatcgatcgacattcaggtcggccgcacc
gggaagctgacgccggtcgggcggttgaagcccgtgctggtcggcggcgtcaccgtcacc
aacgtcacgctgcacaaccgcgacgagatcgcgcgccttggcgtgcggccgggcgatacg
gtggtgctgcagcgggcaggggacgtcatcccgcaggttgtcgagaacctcacccgcgag
gccgagcgcgcgcctttcgagttccccgatcattgccccgaatgcggctcggaagccgtg
gcagaagaaggcgaagtcgacgtgcggtgcaccggcggcctgatctgtccagcccagcgc
accgagcgcctcaagcatttcgtgagccgcgccgcgctcgacatcgaggggctgggcgaa
aagaccatcgacgaattcttcgccaagggctggctggaaagccctgcggatatcttccgt
ctcaaggaccgcagggacgagatcctcgcgcttgagggatggaaggacaagtctgtggaa
aacctgttgagtgctgtggaaagcaagcgcgctcccgatgccgcgcggctgcttttcggg
ctcggcatacgccatgtcggcgcagtcactgcgcgcgacctgatgaagcggttcgagacc
ctgccggccctgcgcgccattgccgagaacgcgcatgtgaaggacggcgaggaacaggcc
gcccaagcttcggaagcctatgccgaactcacgtccatcgacgggatcggaccggccgtg
gtcgaggcgctgggcgacttcttccacgaggagcacaaccgcgaggtctgggacgacctg
ctctcgctggtgtcgccgccgccctacgtcgtggagacgagggacagcgcggttgcaggc
aagacggtggttttcaccggcaagctggaaacgatgagccgcgatgaggccaaggcccag
gccgagcgtctgggagccaaggcatcaggatcggtttcgccgaagaccgatctggtcgtg
gccgggccgggagccgggtccaagctgaagaaggcggcggacctgggaatcgaggtgatc
gacgaggcgcaatgggcggaaatcgtgaaggctgccggctga
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