Nyctereutes procyonoides (raccoon dog): 129516350
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Entry
129516350 CDS
T09008
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
npo
Nyctereutes procyonoides (raccoon dog)
Pathway
npo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129516350 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npo03400
]
129516350 (LIG4)
Enzymes [BR:
npo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129516350 (LIG4)
DNA repair and recombination proteins [BR:
npo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129516350 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
129516350
NCBI-ProteinID:
XP_055191650
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MAATQTSQTVASHVPFADLCSTLERIQRSKGREEKTRHFREFLDSWRRFHDALHKNQKDV
RDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTPTGTRG
DAGDFATIAYFVLKPRCLQKGSLTIQQVNDILDSIASNNSARKKDLIKKSLLQLITQSSA
LEQKWLIRMIVKDLKLGFSEQSVFSAFHNDAAELHNVTTDLEKVCRQLHDPSIGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGFNYTD
QFGDSPREGSLTPFIHSAFKTDVQICILDGEMMAFNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLKKRYEILTSVFTPIPGRIEIVQKAQAHTKKEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHKKALPSSILC
GTEKPEVYIEPCNSVIVQVKATEIVSSDMYKTGCTLRFPRIEKIREDKEWHECTTVDDLE
QLRGKASGKLASKHLDIGGDDEPQEKKRKAVPKIKKIIGIIEHLKAPNLSNINKVSNIFE
DVEFCVMSGTDSHPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIISSNKHDV
VKPEWLLECFKTKSCVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFVDIDLNQLKEVFSG
IKNSSKQTPREMASLIADLEYRYSWDRSPLCLFRHCIVYLDLYAVINDLSTKIEGTRLAI
TALELRFHGAKVVSCLAQGVSHVIIGEDHSRVAVLKSFRRTLKRKFKILQQDWVTESIDK
CELQEENQYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgccacacagacttcacaaactgttgcatctcacgttccttttgcagatttgtgt
tcaactttagaacgaatacagagaagtaaaggacgtgaagaaaaaaccagacacttcaga
gaatttttagattcttggagaagatttcatgatgcccttcataagaaccaaaaagatgtc
agagactctttttatccagcaatgagacttattcttcctcagctagaaagagagagaatg
gcctatggaatcaaagaaactatgcttgctaaactttatatcgaattgcttaatttacct
aaagaaggaaaagacgcccttaaacttttaaattacagaacacccactggaactcgtgga
gatgctggggactttgcaacaattgcgtattttgtgttgaaaccaagatgtttgcagaaa
ggaagtttaaccatacagcaagtaaatgacattttagactcaattgccagcaataattct
gccagaaaaaaggacctaataaagaaaagtcttcttcagctaataactcagagttcggca
ctggaacaaaagtggcttatacggatgattgtaaaggacttaaaacttggttttagtgag
caatctgtattctctgctttccataatgatgctgcagagttgcataatgtcactacagat
ctggaaaaagtctgtaggcaactgcatgatccttccataggactcagtgatatttctatc
actttattctctgcctttaaacctatgctggctgctatagcagatattgagcgaatagag
aaggacatgaaacaccagagtttctacattgaaaccaagctagatggtgagcgtatgcaa
atgcacaaagacggggatgtgtatcagtatttctcccgaaatggatttaactatacggat
cagttcggcgattctccacgggaaggttctcttacaccgttcattcacagtgcattcaaa
acagatgtacagatctgtatcctggatggtgagatgatggccttcaaccctaatacacaa
acttttatgcaaaaggggaataagtttgatatcaaaagaatggtggaggattctgatctg
cagacctgttattgtgtttttgatgtactgatggttaataataaaaagctgggacgtgaa
accctgaaaaagaggtatgaaattcttactagtgtttttacgccaataccaggtagaata
gaaatagtgcaaaaagcacaggctcatactaagaaagaagtaatcgatgctttgaatgaa
gcaatagataaaagagaagagggaatcatgataaaacatcctctatctatttacaagcca
gacaaaagaggtgaaggatggttaaaaattaagcctgagtacgtagatgggctgatggat
gaactggacatcttaattgttgggggctattggggcaaaggttcacgaggtggaatgatg
tctcattttttgtgtgctgtagcagagaagcctcctcctggtgaaaaaccgtcagtgttt
catactctgtgccgtgttggttcaggttatactatgaaagaactgtatgatctgggttta
aaattggccaaacattggaagcctttccataaaaaagctctaccaagcagcattttatgt
ggaacagagaagccagaagtatacattgagccttgtaattctgtcattgttcaagttaag
gcgacagagattgtctccagtgatatgtataaaactggctgcacattgcgttttccacgg
attgaaaagataagggaagacaaggagtggcatgaatgtactactgtggatgacttagag
caacttcgagggaaagcatctggaaagcttgcatctaaacaccttgacataggtggtgat
gatgaaccacaagaaaagaagcggaaagctgtgccaaagattaagaaaattattggaatt
atcgagcacttgaaagcacccaacctttctaatataaataaggtttctaatatatttgaa
gatgtggagttttgtgttatgagtggaacagacagccatccaaagcctgacctggagaac
agaattgcagaatttggtggttatatagtacaaaacccaggcccagacacgtactgcgtg
attgcaggatcggagaacatcagagtgaaaaacatcatttcttcaaataaacatgatgtt
gtcaagcctgagtggctgttagagtgttttaagaccaaaagctgtgtgccgtggcagcct
cgctttatgattcacatgtgcccatcgacaaaagaacattttgcccgtgaatatgattgt
tacggtgacagttattttgttgatatagatttgaaccaactgaaggaagtgttctcagga
attaaaaattctagcaaacaaactccaagagaaatggcttctctgattgctgatttagaa
tatcggtattcctgggaccgctccccactctgtctgttccgacattgtattgtttatctg
gacttgtatgctgttattaatgacttgagtaccaaaatcgagggaacaagattagcaatt
acagctttggagcttcgatttcatggagcaaaagtagtttcttgcttagctcagggagtg
tctcatgtaatcattggggaggatcatagtcgtgttgcagttttaaaatcttttcgaaga
actcttaagagaaagtttaaaatcctgcaacaagattgggtaactgagtcaatagacaag
tgtgagttgcaggaggaaaatcaatatttggtttaa
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