Novosphingobium sp. PP1Y: PP1Y_AT7398
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Entry
PP1Y_AT7398 CDS
T01515
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
npp
Novosphingobium sp. PP1Y
Pathway
npp00300
Lysine biosynthesis
npp00550
Peptidoglycan biosynthesis
npp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
npp00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PP1Y_AT7398
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PP1Y_AT7398
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
npp01011
]
PP1Y_AT7398
Enzymes [BR:
npp01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
PP1Y_AT7398
Peptidoglycan biosynthesis and degradation proteins [BR:
npp01011
]
Precursor biosynthesis
Amino acid ligase
PP1Y_AT7398
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
CCA91680
UniProt:
F6IJ54
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All DBs
Position
792629..794092
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AA seq
487 aa
AA seq
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MKLTDLCSAAGIALTESGEATVTGFAIDHRKVAPGTVFGAFRGAKFNGEDFIAAAIEAGA
VAVVAAPDATVEGAIHFADAEPRRLFARLAAQFFTPVPQALVAVTGTNGKTSTVELTRQI
WRMAGIRAASIGTLGVTTSDETVSTGLTTPDIVTFLGNLSGLAREGVTHVAYEASSHGLS
QFRIEGPRVAAGAFTNLSRDHLDYHATMEEYFAAKMRLFDEVVVDGGTAVVWADDAWSDR
AIEHAAKRGLKLFTVGTKGEHIRLLGRTPGGLGQKLEIEYAGTNHTIDLPLIGAYQAANS
LVAAGLVLATGGEAHATFDALKRLQTVRGRIERAAITPSGAPVYVDYAHTPDALEAAIAA
LRPHVAGRLIVVFGAGGDRDTGKRPEMGKVAADGADLAIVTDDNPRGEDPAAIRSMVLAG
MQDRGREIGDRREAIGAALGEAGAGDIVLIAGKGHEQGQIIGSGADVRVLPFDDVTVARE
MAGALGR
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgaccgatctttgctctgcagccggcatcgccctgaccgagagcggtgaggcg
acggtgaccggcttcgccatcgatcatcgcaaggtcgcgcccggcactgtcttcggcgcc
ttccgcggtgcgaagttcaacggcgaggatttcatcgctgctgccatcgaagccggcgcg
gtcgccgtggttgccgcgcccgatgcgacggtggaaggcgcaatccactttgccgatgcc
gagccgcgcaggcttttcgcccgcctggccgcacagttcttcacgcccgtgccgcaggca
ctggtcgcggtgaccggcaccaacggcaagacctccacggtcgaactgacacgccagatc
tggcgcatggccggcattcgcgccgcctccatcggcacccttggcgtgaccaccagcgac
gagacggtctcgaccgggctgaccacgcccgacatcgtcactttcctcggcaacctctcc
ggcctggcgcgtgagggcgttacccacgttgcctacgaggcatcgagccacggcctttcg
cagttccgcatcgaagggccgcgcgtcgcggccggggccttcaccaacctcagccgagac
cacctcgactatcatgcgacgatggaagagtacttcgccgccaagatgcgtctgttcgac
gaagtggtggttgacggcggcacggcagtcgtctgggcggacgatgcgtggtccgacagg
gcgatcgaacatgccgccaagcgcggactgaagctgtttaccgtcggcacgaagggcgag
catatccgcctcctcggccgcacgcccggcgggctcgggcagaagttggagatcgagtac
gcaggcacgaaccacactatcgatctgccgctgatcggcgcataccaggccgccaattcc
ctggtcgcggcgggactcgtgctggcgaccggaggcgaggcgcatgccaccttcgacgcg
ctcaagcgcctgcagacggtgcggggccgaatcgagcgcgcggcgatcacgccgtccggc
gctccggtctatgtcgactatgcgcatacgcccgatgcactggaagccgcgattgccgcg
cttcgtcctcacgttgccgggcgcctgatcgttgtgttcggtgcgggcggcgaccgcgac
acgggcaagcgcccggaaatgggcaaggttgcggcagatggcgcggatctcgcgatcgtc
accgacgacaacccgcgcggcgaggatcccgccgcgatccggtccatggtcctggcaggc
atgcaggacaggggccgggaaatcggcgacaggcgggaggccatcggcgccgccctcggg
gaagccggagccggcgatatcgtcctgatcgccggcaagggacatgagcaaggacaaatc
atcggcagcggcgcagatgtgcgcgtcctgccattcgacgatgtcacggttgccagggaa
atggctggcgcactggggaggtag
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