Nanorana parkeri (Xizang Plateau frog): 108785997
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Entry
108785997 CDS
T04897
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108785997 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npr03041
]
108785997 (EFTUD2)
Spliceosome [BR:
npr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108785997 (EFTUD2)
Complex C
U5 SnRNP specific factors
108785997 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
108785997
NCBI-ProteinID:
XP_018410708
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MDTDPYDEFGNYIGPELDSDDDDDDDDMGKDDRDVDVAEDDDDDELMGDPDEDRGGMEVV
LHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKAKKFSMMEQGLPTTVYSMEF
LADLMDNSELIRNITLCGHLHHGKTCFVDCLVEQTHPEIRKRHDQDLCYTDILFTEQERG
VGMKSTPVTVVLPDTKEKSYLFNIIDTPGHVNFSDEVTAGFRISDGIVLFIDAAEGVMLN
TERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSMYSTDENL
VLSPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINHLEFSKRLWGDIYFNPKTRKFTK
KAPTSSSQRSFVEFVLEPLYKILAQVVGDVDTTLPQTLEELGIHLTKEELKLNIRPLLRL
VCNRFFGEFTGFVDMCVQHIPSPKSGAKIKVEHTYNGGIDSELGEEMSQCDSDGPLMCHT
TKMYSTDDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWVSVARYH
IEVSRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPS
ELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADP
VVTFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQISWNRKKLGEFF
QTKYDWDLLAARSIWAFGPDITGPNILVDDTLPSEVDKALLSSVKDSIVQGFQWGTREGP
LCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQA
PADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSL
SVFHHWQIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPML
LELAKQDVVLNYPM
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggacactgacccatatgatgagtttggtaactacattggtcctgagctggactcggat
gatgacgacgatgatgatgatatgggcaaagatgacagagatgttgatgtggcagaagat
gacgatgatgatgaattaatgggagatcctgatgaggatcgaggaggaatggaagttgtt
ctccatgaggacaagaagtattaccccactgcagaggaagtgtatgggcccgaggtggag
accattgtgcaggaggaggatactcagcccctgacagagcccattattaaaccagtgaag
gcaaagaagttctctatgatggagcaagggcttccaaccactgtatattccatggaattt
cttgctgatctaatggataactctgagcttattaggaacatcactctgtgtggacacctt
caccatggaaagacctgctttgtggactgtttggtcgagcaaacccatccagaaattcga
aagcgccatgatcaggatctatgctatactgacattctgttcacagagcaggagagagga
gtcggtatgaagagtacgccggtaaccgtcgttcttccagacacaaaggagaaatcttac
ttgttcaatatcattgatacacccggtcatgtaaacttctcggatgaggtgacagctggg
tttcgcatttctgatgggattgtcctgttcattgatgctgctgaaggggtcatgttgaac
acagagcgtctgataaagcatgccgtgcaggaacgcttagctgtcactgtttgcattaat
aagattgaccgtttgatcctggagctcaaacttccccctactgatgcttattacaagctg
aggcacattgtggatgaggttaatggattgctgagcatgtattccacagatgagaatctc
gttctgtctcctcttctgggcaatgtctgctttgcaagctcacagtacagcatctgcttc
accctgggctcttttgccaaaatctatgcagacacctacggtgatattaaccatctggag
ttttctaaacgattgtggggcgatatctacttcaatccaaaaactcgaaaatttaccaag
aaagctccaacaagcagttcccagcgcagttttgtggagtttgtcctggaacccctctac
aagatcctagctcaggtggtgggcgatgtagacacgactctgcctcagaccctggaggag
ctggggatccatctcactaaagaggagctaaaactgaacatccgacctctgctgaggctt
gtgtgtaaccgcttttttggagagtttacaggttttgtggatatgtgtgtccagcacatc
ccttcacctaagagtggcgcaaaaatcaaggttgaacacacgtacaatggaggcattgat
tccgagctaggagaagaaatgagccagtgcgattcagatggacctctaatgtgtcacacc
accaagatgtacagcacagatgacggggtgcagtttcacgcctttggccgggtgttgagc
ggcactattcaggccgggcagccagtgaaagtgttgggagagaattacactttagaagac
gaagaggactctcaagtctgcactgtggggagattgtgggtgtccgtggccaggtatcat
attgaagtgagcagagtgccagccggaaactgggttcttattgagggagtggaccagcca
attgtgaagactgccacaatcactgagccacgaggcaatgaggaggctcagattttccgg
ccgttgaaatttaatacaacatcagtcattaagattgctgtggagcccgtgaacccatca
gagctgccaaagatgttagatggattaagaaaagttaacaagagttacccctcactcacc
accaaggtggaggagtctggggaacacgtcatcctgggtactggagagctgtatttggac
tgtgttatgcacgacctccgcaagatgtattctgagattgacattaaggtggcagatcct
gtggtgactttttgtgagactgttgtggaaacctcatcactcaagtgctttgccgagaca
ccaaataaaaagaataagatcacaatgattgcagaaccactggagaaaggactggctgaa
gacattgaaaatgaagtggtacagatctcttggaacaggaagaaactaggagaatttttc
cagaccaaatacgactgggatttgctggctgcccgttctatctgggctttcgggccagac
attactggacctaacatcttggtagatgacactctgccatctgaggtggacaaagctctg
ctgagttcagtaaaggacagtatagtacaaggattccagtggggtacaagagaggggcct
ctctgtgatgaactgatcaggaatgtgaaattcaagatcctggatgctgtgattgcgcag
gagccactgcatcgtggtggcggacagatcattcctacagcccgcagagtggtatactct
gccttcctcatggccacaccccgtctcatggagccatattattttgtggaagtgcaagct
cccgctgactgtgtctctgctgtgtatactgtcctggccaggaggagaggccacgtcaca
caggacgcccctatacctggatccccactctacaccatcaaagcattcatccctgccata
gattcttttggttttgagacagatctgcgcacacacacccagggacaggccttcagcctg
tctgttttccatcactggcagattgtgccgggagaccccttggacaagagcatcattatt
cgacctctggaaccccagccagcccctcaccttgccagggagttcatgattaagacaagg
cgtaggaagggcctgagtgaagatgtaagcatcagcaagtttttcgacgatcctatgttg
ttggagttggccaaacaggatgtggtcctgaattatcccatgtga
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integrated database retrieval system
