Nanorana parkeri (Xizang Plateau frog): 108787819
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Entry
108787819 CDS
T04897
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108787819 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
npr03000
]
108787819 (KDM2B)
04121 Ubiquitin system [BR:
npr04121
]
108787819 (KDM2B)
03036 Chromosome and associated proteins [BR:
npr03036
]
108787819 (KDM2B)
Enzymes [BR:
npr01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
108787819 (KDM2B)
Transcription factors [BR:
npr03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
108787819 (KDM2B)
Ubiquitin system [BR:
npr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108787819 (KDM2B)
Chromosome and associated proteins [BR:
npr03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108787819 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
108787819 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
Cupin_8
JmjC
LRR_At1g61320_AtMIF1
LRR_4
Motif
Other DBs
NCBI-GeneID:
108787819
NCBI-ProteinID:
XP_018412972
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MEGKDFTYEYVQREALRVPLLFLSKDGLGIKMPDQNFTVRDVKLLVGSRRIVDVMDVTTQ
KGTDMSMSQFVRYYETPETEREKLYNVISLEFSHTKLEKVVKRPTVVDAVDWVDNMWPSK
LKERQKEATNILCEMQYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKVFWLIPP
TVYNLQLYEEWLLSGKQTDIFLGDRSQGCQRIELKQGHTFFIPSGWIHAVYTPADSLVFG
GNILHSFNIPMQLRVFEIEDRTRVHAKFRYPFYYEMCWYVLERYVCTLTNRCYLNKEYQK
ESMLFESTGRPSIDSLSSDSWLEMEEESCDAHTLDEKDDHGEKISKLSGDESLTPNSTQS
DSKESAEKKQKATLMHYLKRTLSNDSDESSRSVVHSDFPKTPSESPSTEVASRWTHLTEF
ELKGLKALVEKLESLPENKKCVPDGIENPHALLEDMKTVLKEHADDDPNLAISGVPVVSW
PKKPAKNRAVGRPKGKLATSPAVKLSTNRTSAGARRRRTRCRKCEACLRTECGECHFCKD
MKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDCVEGQEAKFNVMLMECSICN
EIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSLLK
EQKMNRDNKELTELVKKKEREETPRQNVEEQPKKKVLEGIAKRKPEDGPFKRKRPLEKNS
DPAVRKRLKLVKEDKLFKKKKRTWKTPEERALMAKTLRRIKQEPDDDMGESVPKSKESDQ
SRSSSPTAGPSTQGPDSKEKKKNRRKRKVSNKELSKELSKELNQEIQKTENSLANENHHP
IKSEPESEDEEPKKCMNTNGERMHRFSKELNGTPKEFKHQSLPSPRTTPRVTNRPPPSLS
PPKCVQMERHVIRPPPISPPPDSLPLENGATHVMQREVWMAIFSYLSHKDLCICMRVCKT
WNRWCCDKRLWTLIDLNRCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLMNRLPAL
RDLNLSGCSWIAVSALCSSSCPLLRLLNVQWVEGLKDAQMRDLLSPPTDNRPGMIDNRSK
LRNITELRLAGLDITDASLRLMIRHMPLLSKLDLSYCNHVTDQSINLLTAVGTSTRDSLS
EINLSDCNNVTDQCLTYFKRCGNICLIDLRYCKQVTKESCEQFIAEMSVIVQFGQAEEKL
LQKIS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggagggcaaagactttacatatgaatatgttcaaagagaagcccttagagtccctctt
cttttcctcagcaaggatggactaggtattaagatgccagatcagaattttactgtcagg
gatgtgaaactactagtcggaagtcggcgtatagttgatgtgatggatgtgaccacacaa
aagggtacagacatgagtatgtcccagtttgttcgctactatgagacgccggaaacggaa
agggagaaactgtacaatgtgatcagcctggagtttagccacactaagctggagaaagta
gtcaagaggccaactgtggtagacgcagttgattgggtagataacatgtggccatcaaaa
ttaaaggagagacaaaaagaagcaacaaatatcttatgtgaaatgcagtatcccaaagta
aaaaagtattgtttgatgagcgtcaagggctgtttcactgattttcatattgactttgga
gggacatccgtatggtaccatgtttttcgaggtggaaaggtattttggttgattcctccc
actgtgtataacttgcagctttatgaggaatggcttttatcagggaaacaaactgacata
ttcttaggagacagatcacagggttgtcagaggattgaactgaagcaaggacacaccttc
tttatcccatcaggatggattcacgccgtgtacactccagcagactctctggtgtttggt
ggcaacatactgcacagctttaatattcccatgcaacttcgtgtgtttgagatcgaagac
agaacaagggtgcatgccaaattccgctatcctttctattatgaaatgtgctggtatgtc
ctggagagatatgtttgcactttaaccaaccgctgttaccttaacaaggagtatcaaaag
gaatcaatgctatttgaatcaacaggaaggcccagtatagacagcttgtcctcagattcc
tggttagaaatggaggaagaatcttgtgatgctcatacgctggatgagaaagatgaccat
ggagaaaagatatccaagctatcaggtgatgaatccttgacacccaatagcacacagtcg
gacagcaaagagtcagcagaaaaaaaacaaaaggctacattgatgcactacttaaaaaga
actctatctaatgactctgatgaaagctccaggtctgttgtgcacagtgactttccaaaa
accccatcagaatctccatctacagaggtggcttcgcggtggacacacctgacagagttt
gaactgaagggcttaaaagcccttgtggagaaactagagtctcttccggaaaataagaaa
tgtgtcccagatggaatagaaaatcctcatgctctgctggaagatatgaagactgtactc
aaggaacacgcagatgatgacccaaatctggccatttctggagtacctgtggtgtcttgg
cccaagaaacctgccaagaacagagcagtgggaagaccaaaagggaaacttgccacatct
cccgcagttaaattatctactaacaggaccagcgctggtgcccgccggagacggacgcgg
tgtcgcaagtgcgaagcatgtttacgtacagagtgtggagaatgtcacttttgcaaagac
atgaagaagtttggtggaccagggaggatgaaacagtcatgtataatgaggcagtgcata
gctccagttttgcctcatacagctgtttgtttagtatgcggagaagcaggaaaggaagac
tgtgtggaaggccaagaagcaaagtttaatgtcatgttgatggaatgctccatctgcaat
gaaataatccatccaggatgccttaaggtaaaggaatctgatggtgtggtgaatgatgaa
cttccaaactgctgggaatgtccaaaatgcaaccatgctgggaaaactgggaaagtctac
aagcaaaaaagaggtccaggatttaagtatgcttccaatctgcctgggtcgttacttaag
gagcagaagatgaatcgggataataaagagctaacagaacttgtaaagaagaaagaaaga
gaggaaactcccaggcagaacgtggaggaacagcccaaaaagaaggtcctagagggaatt
gcaaagcgaaaaccagaggatggtccctttaagagaaaacgacctctagaaaaaaattca
gacccagcagttaggaagaggttaaaactagtgaaagaagacaagctcttcaagaaaaag
aagagaacctggaagacgcctgaagaacgcgcactcatggccaaaacattgaggcgcatt
aaacaggagccagatgacgatatgggagaatctgtgccgaaatctaaggaaagtgatcag
tccaggtccagttcacccactgctggtcccagcacacagggtccagattcaaaggagaag
aagaaaaaccgaaggaagagaaaagtttctaataaagaactaagcaaagaattaagcaag
gagctaaaccaagagatccagaaaacagaaaatagcctggcgaatgagaaccaccatcct
attaaatctgagccggagagcgaggacgaggagcccaaaaaatgtatgaacaccaatggg
gagcgcatgcatcggtttagcaaagaactgaatgggactccaaaggagtttaagcatcag
tctcttccaagcccaaggacaacgccaagggtcaccaatcgccctcctccttctttgtcg
cctcccaaatgtgtgcagatggaacgccacgtgataaggcctcctccaatcagccctcct
ccagattccctacctttggagaatggtgccacccatgtgatgcagagagaggtctggatg
gccatctttagctacctcagccacaaagatctgtgcatatgtatgagagtctgcaaaacg
tggaatagatggtgctgtgataaaagattgtggacgctaatcgatttaaatcgctgcaaa
tccataactcctcttatgctcagtgggatcatcaggagacagcctgtgtccttagattta
agctggacaaatatatcaaagaaacaactaagctggctcatgaaccggcttccagctcta
agggatctgaatttatcaggctgttcctggattgccgtatctgcactttgtagttccagc
tgtccgttgctgagattgctcaatgtccagtgggtagaagggctaaaagatgcacagatg
agggatcttttgtctcctccaacagataacagaccaggtatgatagacaaccgtagcaaa
ttgaggaacatcacagagcttcgtctagcaggactggacattacagatgcctcgctgcgc
ctaatgattcgacacatgcctcttctttccaaactggacctgagttactgtaaccatgtg
actgatcagtccattaacctgctcactgcagtgggtacatctaccagggattctctgtca
gaaattaatttatcagactgcaataatgttacagaccagtgcctgacttactttaaacgc
tgtggcaacatctgtctgattgacctcaggtactgcaagcaggtcaccaaggaaagctgc
gaacagttcattgccgaaatgtcagtaattgtacagtttggacaagcggaagaaaaactt
cttcaaaaaattagctaa
DBGET
integrated database retrieval system
