Neodiprion pinetum (white pine sawfly): 124218051
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Entry
124218051 CDS
T08966
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124218051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
npt03041
]
124218051
Spliceosome [BR:
npt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124218051
Complex C
U5 SnRNP specific factors
124218051
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Motif
Other DBs
NCBI-GeneID:
124218051
NCBI-ProteinID:
XP_046480359
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Position
4:16591761..16596906
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AA seq
979 aa
AA seq
DB search
MDADLYDEFGNYIGPDLASESEDEAEYGNGGDDAGDQERSDEEMEEDKDEVREHPDQSTM
AVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLIAPTRRPKFQIKQQQLPDTTYS
IEFLADMMDAPHLIRNIVLLGHLHHGKTTLVDCLVRQTHPYMHSVTDEKALRYTDTLFTE
QQRGVSTKATPVTLLLQDVKAKSYLLNVFDTPGHVNFSDEATAAIRMSDGAVLVVDAAEG
VMLNTERLLKHALQEKLALTVCINKVDRLILELKLPPLDAYYKLRHIIEEVNGLIALYSD
SENPAFVSPALGNVCFASSEYNVCFTLRSFAALYAKNHPQLNAIEFAKRLWGDVYFNSKT
RKFIKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLSSEEMKMNIR
PLLRLVCTRFLGDMSGLVDMCVTHVPSPHSHAPVKVRHVYTGPPDSPLAQDMTNCDPDGQ
LMVHSTKMYPTEDCTLFVVLGRVMSGTLEAGARVRVLGEAYSKADEEDSRILTVGRLWIS
EARYSIELNRVPAGNWVLIEGIDRPIVKTSTITDLSNSDDLHIFRPLKFNTQSVIKIAVE
PVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEIDI
KVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNKKR
LGEFFQTKYDWDLLAARSIWAFGPDCTGPNILVDDTLPSEVDKTLLGSARDAIVQGFQWG
TREGPLAEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLF
VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
QAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINKFF
DDPMLLELARQDVLLNYPL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgacctttacgatgaattcggaaattacatcggccccgacttggcatccgag
agcgaggatgaagctgagtatggaaatggaggagacgatgccggggatcaagagcgatct
gacgaagagatggaagaagataaggacgaggttcgggagcaccctgaccaaagcacgatg
gccgttgtcctccatgaagataaacgctattatccaagcgctttggaagtttatggaccg
gaggtggaaactctggtgcaagaagaagatgcccagcccctcgataagcctctgattgcg
ccaaccagaaggccaaagtttcaaatcaagcaacagcaactgccagatactacgtacagc
atcgagtttcttgcagacatgatggatgcccctcatcttatacgaaatatcgtactcttg
ggtcatttgcatcacggtaaaacgactctcgttgactgcctcgttcgtcaaactcacccc
tacatgcacagtgtaacggatgaaaaggcactcagatacaccgacaccttgtttactgaa
cagcagcgaggtgtgtcaacgaaagccacaccagtcactctactgctccaagatgttaag
gctaagtcatacttgttgaatgtattcgacactccagggcacgtcaacttttctgacgag
gccacagccgctatccgaatgtcggatggggctgttctggttgtagacgcagcagaaggt
gtgatgctaaatacagaacgtctgctgaagcatgcgctgcaggaaaaacttgcactgact
gtttgcatcaataaagtggatagactaatactggaattgaagttgccccctctagacgct
tactacaagttgcgacacataattgaggaagtgaatgggctcattgctctgtactctgat
tctgagaatcctgcgttcgtctccccagctttgggcaatgtttgctttgccagctcggag
tacaatgtttgctttactctgagatcatttgctgctctctatgccaaaaatcatccgcag
cttaacgctatagaatttgcaaagcggctttggggcgatgtatacttcaattcgaaaact
cgaaagttcatcaagaaaccgccgcataataccgctcagcgaagttttatcgaatttatt
cttgaaccactttacaagatttttgcacaggtcgtcggtgacgtcgacaccacacttccg
gatgtgcttgacgaattgggcatcaggttaagctctgaagaaatgaaaatgaatatcagg
ccacttctgagattggtgtgcacaagatttttgggtgacatgagcgggctcgttgatatg
tgcgtaactcatgtgcctagtccacattctcatgctccagtcaaagttcgacacgtctat
actggccctccagattcaccacttgcgcaggatatgaccaactgtgatccagacggccaa
ctgatggtacacagtacaaaaatgtatcccaccgaagattgtaccttgttcgttgtactg
ggaagggtgatgtcgggaactttggaggcgggagcgcgagttcgtgtcttgggtgaggct
tattctaaggccgacgaggaggactcgcgaatattgacggtcggtcgcttgtggatcagc
gaagctcgttactccatagaactgaatcgagtacctgctggtaactgggtgttgatagaa
ggtatcgacaggccgatagtcaaaacgagcacaataactgacctaagcaattccgatgac
ttgcacatattccgaccgttgaaattcaacactcaaagtgtaataaagatcgctgttgag
cctgttaatccgtccgaactaccaaaaatgttggatggattgagaaaagtaaacaaaagc
taccctcttcttggcacaagggtcgaggagagcggtgaacacgttgttctcggtactggt
gaactctatctggattgcgccatgcacgacctgcgcagaatgtactccgaaattgatatc
aaggttgctgatcccgtcgtcgctttcgccgaaacggtggtcgagactagctccttgaaa
tgctttgctgaaactcccaacaagcgaaataaactgacaatgattgctgagcctctggaa
agaggattggcagaggatatcgaggcggaacatgtccgtatcacttggaacaaaaaacgc
ctgggtgaattttttcagacaaagtatgactgggatttgctcgcggcgcgaagcatctgg
gcgtttggtcctgactgcactggacccaacattctggtcgatgacacgctgccctcggag
gtagacaaaacacttttgggaagcgcaagggatgccattgttcaaggattccaatgggga
accagggaaggacctcttgccgaggagcctatcagaaatgtaaaattcaagatattggac
gctgtcattgctcaggaacccctgcacagaggaggtggccagattattccgaccgcaagg
agagtcgcttattcggcatttttaatggccactcctcgcttgatggagccgtatctgttc
gtcgaggtccaagcaccagccgattgtgtttcggcggtttacacggtccttgcaaaacgt
cgcggacacgttacacaagacgctccggttcccgggagtccgttgtatacgataaaagca
tttatcccagctatcgacagtttcggcttcgagacagacctcagaacgcacacgcaaggc
caggcgttttgcctctcagtctttcatcactggcaaatcgtgccgggagatcctctcgac
aaaagcataaccatcagacctctcgaacctcagccagctacccatttggccagagaattt
atgctaaaaaccaggagacgcaaaggcctctccgaagatgtttctatcaacaaattcttc
gacgatcctatgttgcttgaactcgcaaggcaggatgtgttactcaattatcctctttag
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