Neodiprion pinetum (white pine sawfly): 124219817
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Entry
124219817 CDS
T08966
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
npt
Neodiprion pinetum (white pine sawfly)
Pathway
npt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124219817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npt03400
]
124219817
Enzymes [BR:
npt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124219817
DNA repair and recombination proteins [BR:
npt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124219817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
124219817
NCBI-ProteinID:
XP_046483932
LinkDB
All DBs
Position
1:complement(39976477..39985416)
Genome browser
AA seq
906 aa
AA seq
DB search
MCMTMTLTFASKVKFIEFCMILDEISKAQAATKSSHLEYLIKQCREFSEKLKKKDKEADT
SFFPILRLLLPQHDRERGAYGLKETALAKLYVRVLALGQTSKDAQELLHYKVPISGKQSG
GDFAEIAYSILCKRVQIQESSMTVEQVNTILDNIAEKNASNSSKDGEFQQLIQQLSAVEQ
KWLIRILLKDLRIGLSQKKILNAYHADAVKLFDVSMSLRDVCDKLQNTGIGIKYQIEIFS
PFKPMLLERCKIDDVGKFFTNQESYLMETKHDGERFQLHMKDGQFSYFSRNAYNFTEAYG
KSKSSGLLTGKIAKLLNPSCRSIIMDGEMMGWHKVHQRFGSKGMSFDVKKMTPTSTHQPC
FIAFDVIMYNEKLLVDEPLTERLKVLKEAFVEETGVLVRSQTRLVSSKVELLDAFNESMD
TFEEGIVLKKCNSTYKPGVRVGSDCYKIKAEYSADLVEDMDLVIVGGYYGEGRMRGRINS
FLVAVALSQNPETMNDLKFHAVSSVRTGIKVEAFEELLLTLKPHWVKKCPDNVVGPKKDP
PNLWIEPKNSIVLKLRATELVRSSSYPTGYSLRFPRVVAIRGRDEKSWRECCTTEEFHSL
IKGPGVIQKLTKRHVTEHDVMEHLPAISPRKTKNRTITVINYNPCPTTAVSRISRLLDDK
EICVVNGNNEISKEDVEKIVREHGGSIVQNPGGKTFCAIVGNANKLRVKNMIQGQKYNVV
KLEWLLRATRPENFASLQPWLPWELLFATESTRSHMSTVFDDTYDSYTQDTNIDDLKRSL
ERAAELAKDSQLTNDQYKEIDRELFGHETSPFSVFRGSVGYFCTSDKQRNLEFRFMGGTV
TGILDNHVTHIFALKNSNIPAEIRRLEAGESATKVLDEQWIADCFRERKLLPEDEYSIHQ
NTTNSC
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtgtatgacgatgacgcttacatttgcctcaaaagttaaattcatagaattttgtatg
attctcgatgaaatctccaaagcgcaagctgccacaaaatctagccatttggaatatttg
atcaagcaatgtcgcgaattcagtgagaaattgaaaaagaaagataaagaagcggacact
tcattttttccaatactgaggctgctcctgccacagcacgatcgtgagcgtggggcttac
ggtctgaaagagacagctttggcaaagttatatgtacgagtcttagctcttggacagact
agcaaagatgctcaggaattactgcactacaaagttccgatatctggaaagcaaagcggt
ggagactttgcagagattgcatattcaattttgtgtaaacgtgttcaaattcaagaaagt
tcaatgactgttgaacaagtaaatacgattctagacaatattgctgagaaaaatgccagc
aacagcagtaaagatggagaatttcaacaacttattcaacaattaagtgctgttgagcaa
aagtggctgatccggattcttctgaaggatttgagaatcggactttcgcagaaaaaaatt
ctaaatgcctatcatgcagatgcagtgaaactgtttgacgtatcaatgagcctccgtgat
gtatgtgacaagttgcagaacacaggcattggaataaagtatcaaatagaaattttctcc
ccgttcaagccaatgctactggaaaggtgtaaaatcgatgatgttggtaaattttttacc
aatcaagaatcatatttgatggagacaaagcatgacggggagagatttcagttgcacatg
aaagatggccagttcagctatttttccaggaacgcatataatttcacagaagcatacggc
aaatctaaatcttcaggtttgctaactggtaaaattgcgaaattgttgaacccttcttgc
cgctccatcattatggatggtgaaatgatgggatggcacaaggttcaccagagatttgga
tccaaaggaatgagttttgacgtgaagaaaatgacaccgacgagcacacaccagccctgc
tttattgcctttgacgtgatcatgtacaacgaaaagctccttgttgacgaacctttaacg
gaacgtctaaaggtgctgaaggaagctttcgtcgaggaaacgggtgtcttagtccgaagc
caaacgagactagttagcagcaaagttgaattactggatgcatttaacgaaagtatggat
acttttgaagagggaattgttctgaagaaatgtaacagcacttacaaaccaggtgttcgt
gtgggtagcgattgctataagataaaggcagagtattctgctgaccttgttgaagatatg
gatttagttattgtcggagggtattacggtgaagggagaatgaggggccgcattaacagt
tttcttgttgcggtggcgctttctcaaaatcctgaaacaatgaatgacctcaagtttcac
gcagtctcttcggtgcgaactggaatcaaggtagaggcgttcgaagaattgttgttgaca
ttgaaacctcattgggttaagaaatgtcctgacaatgttgttggaccaaagaaagaccct
cctaatttgtggattgagccaaaaaattctatagtcttgaagttacgtgccacagaattg
gtgcggtcaagctcttatccaactggttacagtttaagatttcctcgggttgtcgcaatc
agaggacgagatgagaagagttggcgcgaatgctgcacaacagaggaattccactcactt
ataaagggtcctggagtaattcaaaagctaacaaaacgtcatgtaaccgaacacgatgtt
atggaacatcttccagcaatatctccaagaaagacgaaaaacagaactatcacagttata
aactacaatccttgtccgacgaccgctgtctcacgtatcagtcgactgttagatgacaag
gagatctgtgttgtgaacggaaacaacgagatctccaaggaggacgttgaaaaaattgtg
cgtgaacatgggggaagtatagtacaaaatcctggcggaaagactttttgcgctattgta
ggaaatgctaacaagcttagagtaaaaaacatgatacagggtcagaagtacaatgttgtt
aaattagagtggcttttgcgtgctacaagaccagaaaactttgcaagcctccagccttgg
ctcccatgggaactgttgtttgctactgagtcaaccagaagccatatgtcaacagttttc
gatgatacatatgatagttatacgcaagatacgaatatagatgatttaaaacggtctttg
gaacgagctgcagaattggcaaaagattcgcagttgacaaacgaccagtacaaggaaatc
gacagagagctgtttggtcatgaaacatcaccgttctcagtgtttcgtgggagcgtagga
tatttttgtacgagcgataaacaacgaaatctcgagtttcgcttcatgggtggaacagtt
actggtatacttgacaatcacgtgactcatatctttgccttgaagaacagcaacattcct
gcagaaattagaaggctcgaggctggagaatcggcgacaaaggttctcgacgagcaatgg
atagcggactgctttcgcgaacgaaaattgctcccagaggacgagtattcgatccaccaa
aataccacgaacagctgttag
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