Candidatus Nitricoxidivorans perseverans: OHM77_01775
Help
Entry
OHM77_01775 CDS
T09820
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npv
Candidatus Nitricoxidivorans perseverans
Pathway
npv03030
DNA replication
npv03410
Base excision repair
npv03420
Nucleotide excision repair
npv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OHM77_01775 (ligA)
03410 Base excision repair
OHM77_01775 (ligA)
03420 Nucleotide excision repair
OHM77_01775 (ligA)
03430 Mismatch repair
OHM77_01775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npv03032
]
OHM77_01775 (ligA)
03400 DNA repair and recombination proteins [BR:
npv03400
]
OHM77_01775 (ligA)
Enzymes [BR:
npv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OHM77_01775 (ligA)
DNA replication proteins [BR:
npv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OHM77_01775 (ligA)
DNA repair and recombination proteins [BR:
npv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OHM77_01775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OHM77_01775 (ligA)
MMR (mismatch excision repair)
DNA ligase
OHM77_01775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OHM77_01775 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
WIM06047
LinkDB
All DBs
Position
350691..352688
Genome browser
AA seq
665 aa
AA seq
DB search
MLPAERAATLRAEIERHNHAYYVLDAPTIPDAEFDKLFRELQDIEESHPELRAPDSPTRR
VGGAPLAAFGQVAHGVPMLSLNNAFADDEVAAFDRRCREGLGLDEVAYAVEPKFDGLAIT
LIYEDGLFVRGATRGDGFTGEDVTDNLRTVRSIPLHLQGGGWPARLEVRGEVLIFKADFE
KLNARCRERGEKEFANPRNAAAGSLRQLDPKVTARRPLRFFAYGVAEMEYWPETHGQLLD
QLAGWGFPVAHERQLAAGLSGLLGCYRILGFARDSLPYDIDGVVYKVDSIADQERLGFVS
RAPRWAVAHKFPAQEALTTVEAIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEV
RRKDVRVGDTVIVRRAGDVIPEVVAIVSEQRPIMAPEFMMPKACPVCGSAVERPEDEAIA
RCTGGLFCPAQRKQALLHFASRRAMDIEGLGEKLVDQLVDNGLVETPADIYGLGMSAVAN
LERMAEKSAANLLDAIEKSKDTTLARFIYALGIRNVGEATAKDLARHFGGLSALMAADEA
ALRQVPDVGPVVAASIARFFAEPHNAAVIGALVAAGVRWEEGASAPMVSSAIVGKTFVLT
GTLPTLTRDEAKELIEAKGGKVAGSVSKKTDFVVAGSEAGSKLDRARELGVAVIDEMQLR
ELLEQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccgccgagcgcgcggccacgcttcgcgccgagatcgagcgccacaaccacgcc
tactacgtcctcgatgcgccgacgatcccggacgcggagttcgacaagcttttccgggaa
ttgcaggacatcgaggaatcacacccggagcttcgcgcgcccgattcgccgacccggcgc
gtcggcggagcgccgctggcggcgttcgggcaggtcgcgcatggcgtgccgatgctctcg
ctcaacaacgcctttgccgacgatgaggtcgccgccttcgaccgccgctgccgcgagggg
ctgggcctcgacgaggtcgcctatgccgtcgagccgaaattcgacggcctggcgatcacg
ctgatctatgaggacggactctttgtccggggcgcgacgcgcggcgacggctttaccggc
gaggacgtgacggacaacctgcgcacggtgcgcagcattcccctgcatctgcagggcggg
ggttggcctgcgcggctggaagtgcgcggcgaggtgctgatcttcaaggccgatttcgag
aagctcaacgcccgctgtcgcgagcgtggcgagaaggaattcgccaacccgcgcaacgcc
gccgccggcagcctgcgccagctcgacccgaaggtgacggcgcgccgtccgctgcgattc
tttgcctatggcgtggctgaaatggagtactggcccgaaacgcatggccagctgctcgac
cagttggccggatgggggttccccgttgcgcacgagcgccagctggcggctgggctatcg
ggtctgctgggctgctacaggattctcgggttcgcgcgcgattcgctcccctacgacatc
gacggggtggtctacaaggtcgattcgatcgcggaccaggaaaggctgggcttcgtctcc
cgcgcgccgcgctgggccgtcgcgcacaagttcccggcgcaggaggctctgaccacggtg
gaggccatcgaggtgcaggtcgggcgcacgggtgcgatcacacccgtggcgcggctggcc
ccggtgttcgtcggcggcgtgaccgtgaccaacgcgacgctgcacaacgaggacgaggtt
cggcgcaaggacgtgcgcgtcggcgacacggtgatcgtgcgccgcgccggcgacgtgatc
ccggaggtggtggccatcgtgtcggagcagcggcccatcatggcgccggagttcatgatg
ccgaaggcctgcccggtctgcggctcggccgtcgagagacccgaggacgaggccatcgcc
cgctgcaccggcgggctgttctgtcccgcgcagcgcaagcaggcgctgctgcacttcgcc
agccgccgcgcgatggacatcgagggcctgggcgaaaagctcgtcgaccagctcgtcgac
aacggcctcgtggaaacgcccgccgatatttacgggctcggcatgagcgcggtggcgaac
ctcgaacgcatggccgaaaagtcggccgccaacctgctcgacgccatcgagaagagcaag
gacacgacgctcgcccgtttcatctacgcgctgggcatccgcaacgtcggcgaggccacg
gcgaaggacctggcacggcacttcggcggcctttccgcgctgatggcggcagacgaagcc
gcgctccggcaggtgcccgacgtcggcccggtcgtcgccgcctccattgcccgcttcttc
gccgagccgcataatgccgcggtcatcggggcgctggtcgccgccggcgtgcgctgggag
gagggcgcgtcggcgccgatggtatcctcggccatcgtcggcaagaccttcgtgctcacg
ggcacgctgccgacgctgacccgagacgaggcgaaggaactgatcgaggcgaaaggcggc
aaggtcgccggctcggtgtcgaagaagaccgattttgtcgtggccggcagcgaagccggc
tcgaagctggacagggcgcgggaattgggtgtggctgtgatcgatgaaatgcaattaagg
gagttgctcgaacaatga
DBGET
integrated database retrieval system
