Candidatus Nitrosymbiomonas proteolyticus: NPRO_12720
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Entry
NPRO_12720 CDS
T07108
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npy
Candidatus Nitrosymbiomonas proteolyticus
Pathway
npy03030
DNA replication
npy03410
Base excision repair
npy03420
Nucleotide excision repair
npy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NPRO_12720
03410 Base excision repair
NPRO_12720
03420 Nucleotide excision repair
NPRO_12720
03430 Mismatch repair
NPRO_12720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npy03032
]
NPRO_12720
03400 DNA repair and recombination proteins [BR:
npy03400
]
NPRO_12720
Enzymes [BR:
npy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NPRO_12720
DNA replication proteins [BR:
npy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NPRO_12720
DNA repair and recombination proteins [BR:
npy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NPRO_12720
NER (nucleotide excision repair)
GGR (global genome repair) factors
NPRO_12720
MMR (mismatch excision repair)
DNA ligase
NPRO_12720
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NPRO_12720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
UBM
Motif
Other DBs
NCBI-ProteinID:
BBO23677
UniProt:
A0A809S4K1
LinkDB
All DBs
Position
complement(1404154..1406175)
Genome browser
AA seq
673 aa
AA seq
DB search
MDLATRAAELREALRRHNYLYYVLGEPEISDTEYDLMFRELLEIEQAHPEIQTPDSPTLI
VGAPPLERFESHQHAVPMLSLDNAFTPDELRAFDQRVRRGLGDGSAIEYLCELKFDGVSI
SLSYENGPLQVATTRGDGFAGEVVTPNARTVRGVPLRLREPLAGLIEVRGEVLMMKADFE
RVNEERAASGEQVFVNPRNAAAGGLRQLDSRLTAQRKLSFFAYSLGAGPRLAETQFDTLN
ALRDLGFAVRVDQAKVCTGIDEVCEFVERAAGTRADLPFAIDGIVVKVNDLGLQEELGST
ARGPRWAIAYKFAAEQAMTRLERIVWQVGRTGAITPVAELEPVFVGGVTVGRATLHNIDE
IRRKDVREGDRVIVQRAGDVIPEVVGPVLSERPPDASPPQEPTECPECGGPVAKPAGEAI
LRCQNRKCPAQTAAKLRHLASRSALDIEGLGEKIIDRLLELGWLSDLPSVFRLNERKAEL
VELDRMGEQSVANLLQAIETAKTRPLDRFLHALGIPFVGEKAARDLARHFRSLGAILTAD
YGQLIAVPDVGPRTASEIQLFFEDPETRTMIEDLLNLGVAPVEPDAPVCDLFAGQTWVFT
GKLESFPRDKAEKCVERLGGKTASSVSKNTFAVVAGPGAGSKLDQAQKLGVRVLDEAEFL
AMLPDDVRHEVAG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggacttggccacgcgggcagcggaactgcgggaggccctccgacgccacaattacctc
tactatgttctcggtgaacctgagatcagcgacaccgagtacgacctgatgttccgcgaa
ctgctcgaaatcgaacaggctcacccagagattcaaacgccggacagtccgaccctcatt
gtcggcgcgccgcccctcgaacggttcgaatcgcaccagcacgccgtgccgatgctttcg
ctcgacaacgccttcacccctgacgaactccgcgcgttcgatcagagggtccgcaggggc
cttggcgacggttcggcgatcgagtacctctgtgagttgaagttcgacggcgtttcgatc
tcgctgtcctatgaaaacggcccgctccaagtcgccacgacgcggggagacgggttcgcc
ggggaggtcgtgacccccaacgcgcgaacggtgcggggcgttcccttgcgcctccgagaa
ccgctcgccgggttgatcgaggttcgcggcgaggttctgatgatgaaggccgactttgaa
agggtcaacgaggagcgcgccgcatcgggcgagcaagtgtttgtcaatcctcgcaacgcc
gccgcaggggggcttcgccaactcgacagccgcctcaccgcgcaacggaagctgagcttc
ttcgcgtattcgctgggggctgggccccgacttgcggagactcaattcgacacgctcaac
gccctgagggatctcggctttgccgtccgcgtcgaccaagcgaaggtctgcacggggatc
gacgaggtttgcgaattcgttgagcgggcagcgggaactcgagcggacctccccttcgca
attgacggcatcgtcgtgaaggtgaacgacctcggacttcaagaagaactcggaagcacg
gcgcgcggacctcgttgggccatcgcgtacaagttcgcagccgagcaggccatgacccgg
ttggagcggatcgtgtggcaagtgggccggaccggcgcgatcaccccggtggccgaattg
gagccggttttcgtaggtggggtgaccgtggggagagccaccctgcacaacatcgacgaa
atccgccgcaaggacgtgcgcgaaggtgaccgagtgatcgttcagcgcgccggagatgtc
atccctgaggtcgttggaccggtgctttctgagcgtcctcccgacgcctccccgccccaa
gaacccaccgagtgccccgagtgcggcggccctgtggccaagcccgccggcgaagcgatc
ttgcgatgccaaaaccgtaaatgccccgcccaaacggccgccaagctccgccacctcgcc
tcgcggtccgctctcgatatcgaggggctgggcgaaaagatcatcgacaggttgctcgaa
ctcggctggctctccgatctgcccagcgtgtttcgtctgaacgaacggaaggcggagttg
gtggaactggatcggatgggcgagcaaagcgttgccaacctccttcaggccatcgagacc
gccaagacgagacccctagatcggttcctccatgcgctcggaatcccgtttgtgggtgag
aaagccgctcgcgacctcgcccggcactttcggagtcttggcgcgattctgacggcggac
tatgggcagctcattgcggtcccggacgtcggcccgcgcacggcctcagaaatccaactc
ttcttcgaagaccccgaaactcgaacgatgatcgaggacctgctgaaccttggagtcgcg
cccgtcgaacctgacgcgccggtctgcgacctcttcgcggggcagacttgggtttttacg
ggaaagcttgagagcttcccacgcgacaaagccgaaaagtgcgtcgagcggctggggggc
aagaccgcgtcgagcgtcagcaagaacacttttgcggtcgtggcgggtccgggcgcgggc
agtaagctcgatcaagcccaaaaactgggcgtccgcgtactcgacgaggcggagttcctt
gcgatgctgccggacgacgtccgccatgaggtcgccggttga
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integrated database retrieval system
