Nostoc piscinale: ACX27_04860
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Entry
ACX27_04860 CDS
T09766
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
npz
Nostoc piscinale
Pathway
npz03030
DNA replication
npz03410
Base excision repair
npz03420
Nucleotide excision repair
npz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACX27_04860 (ligA)
03410 Base excision repair
ACX27_04860 (ligA)
03420 Nucleotide excision repair
ACX27_04860 (ligA)
03430 Mismatch repair
ACX27_04860 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npz03032
]
ACX27_04860 (ligA)
03400 DNA repair and recombination proteins [BR:
npz03400
]
ACX27_04860 (ligA)
Enzymes [BR:
npz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACX27_04860 (ligA)
DNA replication proteins [BR:
npz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACX27_04860 (ligA)
DNA repair and recombination proteins [BR:
npz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACX27_04860 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACX27_04860 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACX27_04860 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACX27_04860 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
ALF52331
UniProt:
A0A0M4TT51
LinkDB
All DBs
Position
1093595..1095631
Genome browser
AA seq
678 aa
AA seq
DB search
MIQIHPEAQRTEELRQLLQQASYAYYVLDAPIMEDAVYDQLYRELQELETQHPELVTPDS
PTQRVGERPATHFTSVRHNIPLYSLENAFNIDELQAWDQRWRRQLPTTDAVKYVSELKID
GSALALTYQDGVLVRGATRGDGVTGEEITQNVRTIRSIPLRLNFDGIEPIERIEVRGEAF
LPLEVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHIPGMDDA
SIANTQWEALELLQKMGFRVNPNHQLCESLAEVAEYYKYWDTERLNLPYMTDGVVVKLNA
FKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVIKELRPADTVPFVMPSHCPVCGQ
EVVRESGEAVTRCVNASCAAILKGSIEHWVSRDALDIKGVGEKLVHQLVDKGLVHSVADL
YDLTEAQLLSLERMGEKSAQKLVDAIAQSKNQPWHRVLYGLGIRHVGSVNAQLITEKYPA
VEKLETAKQSDIEGIYGIGAEIAQSVYQWFHIDANQALIERLRNRGLQLAAEETATVNES
NQKFAGKTFVVTGTLPTLKRDEAKALIHKAGGKVTDSVSQKTDYLVVGEDAGSKLAKAQS
LGITQLTEAQLLQMLADE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgattcagattcatcccgaagcccaacgcacagaagaattacgccagcttttgcaacaa
gcgagttacgcctattatgttttggacgcaccaatcatggaggatgcagtctatgaccag
ctataccgcgaattgcaagagttggaaacgcagcatccagaattagtgacacccgacagt
ccgactcagcgtgtgggtgaaagaccggcgactcatttcacttcagtgcggcataatatc
cccctgtacagtctggagaatgcgtttaatattgatgagttgcaagcttgggatcaacgt
tggcggcgacaactcccgacaactgacgcagtaaaatatgtctcggagttgaaaattgat
ggttcggctttggcgctgacttaccaagatggtgtattagtcaggggtgcaactagaggt
gatggggttacaggtgaagaaattacccaaaatgtgcggacaattcgttctattcccttg
cgtttaaactttgatgggatagaaccgatagaaagaatagaagtgcgcggtgaagcattt
ttaccgttggaagtgtttaagcaaatcaacgaagaacggcaaaaagcaggtgaacagtta
tttgcaaatccccgcaacgccgccgcaggtacactcagacagttagactcccgcattgtg
gcgcggcgacggttagatttctttgcatacactctgcatattccggggatggatgatgcg
agtattgctaatacccaatgggaagccttggaattgttgcaaaaaatgggttttcgggta
aatcccaatcatcaactgtgtgaatctttggcagaagtggcagaatactacaaatattgg
gatacggaaagattgaatttaccctacatgaccgatggtgtagtggtgaaactaaatgct
tttaaactgcaagaacagttagggtttacccaaaaatttccgcgctgggcggtggcgttg
aagtatccagccgaggaagcacccacccgtgtggaaaatattgcggtgaatgtgggtaga
actggggcgttaacaccgttagcagagatgcgtccggtacaattggcggggacaacagtt
tctcgcgctaccttacataatagcgatcgcatcgcccaattagacatccgcatcggtgat
actgtgattgttcgcaaagctggggaaattattcccgaagtggtgcgggtaattaaagaa
ctgcgtccagctgatactgtaccatttgttatgcctagccactgccctgtttgcggtcaa
gaggtggtgcgagaatcaggagaagccgtgactcgctgcgtcaatgcttcttgtgcagct
attctcaaaggttccattgaacattgggttagccgggatgctttagatattaaaggcgtg
ggtgaaaaattagtgcatcaactggtagataaaggtttggtgcattctgtcgctgatttg
tatgatttgacagaagcacaattgctgagtttagaaagaatgggagaaaaatcggcacag
aaattagtagatgcgatcgcccaatcaaaaaatcaaccttggcatagggtattgtatggt
ttaggcattcgtcatgtcggcagtgtaaatgcccaactcatcactgagaaatatcccgca
gttgagaaattagaaaccgccaaacaatcagacattgagggtatttatggtattggtgca
gaaatcgcccaatctgtttatcagtggtttcatattgatgccaatcaagctttaattgag
aggttgcgaaatagaggtttacaattagctgctgaagaaactgcaactgttaatgaaagt
aatcaaaagtttgctgggaaaacctttgtagtcacaggtacattacccaccttaaagcgg
gatgaagctaaagcactcatccacaaagcaggcggtaaagtgactgattccgtcagccaa
aaaactgattatttggtagtaggagaagatgctggttctaaattagccaaagcccagagt
ttaggcattactcagttaacagaggcacagttactccagatgttagctgacgaataa
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