Nitratireductor rhodophyticola: T8J41_12815
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Entry
T8J41_12815 CDS
T09622
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nrh
Nitratireductor rhodophyticola
Pathway
nrh03030
DNA replication
nrh03410
Base excision repair
nrh03420
Nucleotide excision repair
nrh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T8J41_12815 (ligA)
03410 Base excision repair
T8J41_12815 (ligA)
03420 Nucleotide excision repair
T8J41_12815 (ligA)
03430 Mismatch repair
T8J41_12815 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nrh03032
]
T8J41_12815 (ligA)
03400 DNA repair and recombination proteins [BR:
nrh03400
]
T8J41_12815 (ligA)
Enzymes [BR:
nrh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
T8J41_12815 (ligA)
DNA replication proteins [BR:
nrh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
T8J41_12815 (ligA)
DNA repair and recombination proteins [BR:
nrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
T8J41_12815 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T8J41_12815 (ligA)
MMR (mismatch excision repair)
DNA ligase
T8J41_12815 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
T8J41_12815 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
Nlig-Ia
DUF5315
Motif
Other DBs
NCBI-ProteinID:
WPZ13051
LinkDB
All DBs
Position
2724707..2726818
Genome browser
AA seq
703 aa
AA seq
DB search
MPKAKQAVDSLTEAQARDELEKLAQEIAGHDKRYHAEDAPTISDAEYDALRRRNLAIEQR
FPELVREDSPSRRVGAPVSEKFEKVRHKVPMLSLDNAFSDEDVVDFVARIRRYLKLDADA
PVAMTAEPKIDGLSLSLRYEKGRLVSAATRGDGQEGENVTANARAVTDIPNVLDGEPPEV
IEVRGEVYMTHADFFALNKRQEEAGKQTYVNPRNTAAGSLRQLDSSVTAARPLKFFAYAW
GEVSDMPSDTQTGMVAALERYGFRVNDLMKRCESAEALLAQYRMIEERRATLPYDIDGVV
YKVDDLALQQRLGFVSRSPRWAIAHKFPAEKATTILNGIDIQVGRTGALTPVARLEPVTV
GGVVVTNATLHNAEEIERLGVMIGDTVTVQRAGDVIPQILGVIEEKRPADAQAFEFPSVC
PCELKTPVVREGIGSGAEGVVRRCSGEFACPFQRVEHLRHFVSRRAFDIDGLGDKQIEFF
FNDPDLPVKAPGDIFTLARRDADNLKKLKDKEGWGATSAANLFDAIEARRSIALERVIYA
LGIRHVGEQTAKTLARAYGSWQEFHDAVLAVANGDAQAREEMDALDDIGDAVIDSLAHYF
GEAHNRELVEALAGEIDVQEAERPTMDSPVAGKTIVFTGALERMSRDEAKAMAERLGAKV
AGSVSKKTDLVVAGPGAGSKLKKAADLGVEVIDEDAWFERVGA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagccaagcaagccgttgatagtctgacggaagcccaagccagggacgagctt
gaaaagctcgctcaggagattgccgggcacgacaaacgctatcatgccgaagacgcgccg
acgatctcggatgcggaatatgatgcgctgcggcggcgcaatctggccatcgaacagcgc
tttccggaactggtgcgggaggattcgccctcccggcgtgtgggtgctcccgtttcggag
aagttcgagaaggtgcggcacaaggtgccgatgctttcgctcgacaacgcgttttccgat
gaggatgtggtcgatttcgtggcgcgcatccgccgctatctgaaactcgacgcggatgcg
ccggtggcgatgacggccgagccgaagatcgacggtctttcgctttccctgcgctacgaa
aaggggcgtctcgtttcggctgcgacccgcggagacgggcaggaaggcgagaacgtgacg
gccaatgcgcgggccgtgacggatattcccaatgtgctcgatggagagccgcccgaggtg
atcgaggtgcgcggcgaggtctacatgacccatgccgactttttcgcgcttaacaagagg
caggaggaagcgggcaagcagacctatgtgaacccgcgcaacacggcggcgggctcgctg
cgccagctcgattcctccgtgacggcggcacggccgctcaaattcttcgcctatgcctgg
ggtgaggtctccgacatgccgtccgacacgcagacgggcatggtggcggcgctggagcgc
tatggctttcgcgtcaacgatctgatgaagcggtgcgagagcgcggaggcgcttctggcg
caataccgcatgatcgaggaaaggcgggcgacgctgccctatgacatcgatggcgtggtc
tacaaggtggacgatctggcgctgcagcagcggctgggcttcgtgtcgcgcagcccgcgc
tgggcgatcgcccacaaatttcctgccgagaaggcgacgaccattctgaacgggatcgac
attcaggtgggccgcacgggcgcgctgacgcctgttgcgcggctcgagcccgtcacggtg
ggcggtgtggtggtgaccaatgcaacgctgcacaatgccgaagagatcgaacggctcggc
gtaatgatcggcgacacggtgacggttcagcgcgcgggcgatgtgatcccgcagatcctg
ggtgtgatcgaggagaagcgaccggcggatgcgcaggccttcgagtttcccagtgtgtgc
ccgtgcgaactgaagacgccggtggtgcgtgaggggataggctctggtgcggagggcgtg
gtgcggcgctgttcgggcgaatttgcctgcccgttccagcgggtcgagcatctgcgccac
ttcgtgtcgcggcgcgccttcgacattgacgggctgggcgacaagcagatcgagttcttc
ttcaacgatcccgatctgccggtgaaggcgccgggcgatattttcacgctcgcaagacgc
gatgccgacaatctcaaaaagctgaaggacaaggaagggtggggcgcgacctcggccgcc
aatctgttcgatgccatcgaggcgcggcgctccatcgcgctggagcgggtcatctatgcg
ctcggcattcgccatgtgggtgagcagacggcgaagacgctggcgcgggcctatggctcc
tggcaggagttccacgatgccgtgctggcggtggccaatggcgacgcacaggcgcgcgag
gagatggacgcgctggacgacatcggcgatgcggtgatcgattcgctggcacactatttc
ggcgaggcgcacaaccgcgaactggtcgaggcgctggcgggcgaaatcgatgtgcaggag
gcggaacggccgacgatggattcgcccgttgccggcaagaccatcgtgtttaccggcgcg
ctggagcgcatgtcgcgcgatgaagccaaggccatggccgaacgactgggggcgaaggtg
gcggggtccgtgtccaaaaagacggatctggtggttgccggaccgggggcgggctcgaag
ctcaagaaggccgcggatctcggcgtggaggttatcgacgaggacgcctggttcgagcgg
gtgggggcgtaa
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