Nocardioides renjunii: SHK17_14675
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Entry
SHK17_14675 CDS
T10238
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nrn Nocardioides renjunii
Pathway
nrn03030
DNA replication
nrn03410
Base excision repair
nrn03420
Nucleotide excision repair
nrn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nrn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHK17_14675 (ligA)
03410 Base excision repair
SHK17_14675 (ligA)
03420 Nucleotide excision repair
SHK17_14675 (ligA)
03430 Mismatch repair
SHK17_14675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nrn03032
]
SHK17_14675 (ligA)
03400 DNA repair and recombination proteins [BR:
nrn03400
]
SHK17_14675 (ligA)
Enzymes [BR:
nrn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SHK17_14675 (ligA)
DNA replication proteins [BR:
nrn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHK17_14675 (ligA)
DNA repair and recombination proteins [BR:
nrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SHK17_14675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHK17_14675 (ligA)
MMR (mismatch excision repair)
DNA ligase
SHK17_14675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHK17_14675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Prot_ATP_ID_OB_C
HHH_3
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WQQ21140
LinkDB
All DBs
Position
complement(3071951..3074107)
Genome browser
AA seq
718 aa
AA seq
DB search
MSATDQPDLARDDVADAAAVTAAPPEVRERHREVSEQVEDARWRYYVLDTPTLSDADFDT
RLRELEALEDDYPELRTPDSPTQKVGGAVSTEFTAVDHLQRMESLDNAFSYDELEGWYAR
LAREGLETPDLLCELKVDGLAINLLYERGRLVRGLTRGDGRTGEDVTPNVKTIDSVPHRL
TGTDEFPVPELLEVRGEVFLPVEAFERLNVTMTEAGRPAFANPRNAAAGSLRQKDPRVTA
SRDLGMVCHGIGERRGFEPKAQSHAYEALATWGLPTSDQVRVVGTLTEVEAYIENAGEHR
HSIVPYEIDGVVVKVDDVSLQRRMGSTSRAPRWAIAFKYPPEEVNARLLAIEVQVGRTGR
VSPFGRMEPTRVAGSTVEKATLHNAHEVRRKDVRPGDTVILRKAGDVIPEIVGPVLALRP
EGLAEWVMPTECPACGTTLAQQKEGDRDLRCLNHEACPAQVRERVFHVAGRGAFDIEGLG
YEAASALLASGAITNEGDVFDLDEARLLTTPLFTRAPKKGEEGTHVSPDGSRALTANGQK
LLANLDKATGAALWRVLVALSIRHVGPTAARALAQEFGSWQAIAAATEEELAATEGVGPT
IAAAVVEWREVPWHQEIVAKWSGHLPLADERDESVPRTLEGLTIVATGSLQGYTRDSVKE
AIITRGGKAAGSVSKKTDYVVVGENAGSKAEKAEQLGVPVLDEEQFTRLLEQGPAGLS
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgaccgaccagcccgacctcgcccgcgacgacgtcgccgacgccgccgctgtc
accgcagccccgccggaggtgcgcgagcgtcaccgtgaggtgagcgagcaggtcgaggac
gcccgctggcgctactacgtgctcgacacgccgaccctgtccgacgccgacttcgacacg
cgcctgcgcgagctggaggcgctcgaggacgactaccccgagctccgcacccccgattcc
ccgacgcagaaggtcggcggcgcggtgtcgacggagttcaccgccgtcgaccacctgcag
cggatggagagcctcgacaacgccttctcctacgacgagctcgaggggtggtacgcccgg
ttggcccgcgagggcctcgagacgcccgacctgctgtgcgagctcaaggtcgacggcctc
gccatcaacctgctctacgagcgcggccggctggtgcgcgggctgacccgtggcgacggc
cgcaccggcgaggacgtcacgcccaacgtcaagaccatcgactcggtgccgcaccggctg
accggcaccgacgagttcccggtgcccgagctgctcgaggtccgcggcgaggtgttcctg
cccgtcgaggcgttcgagcggctcaacgtgaccatgacggaggccggtcggcccgccttc
gccaacccccgcaacgccgcggccggctccctgcgccagaaggacccgcgggtcaccgcg
agccgcgacctcggcatggtgtgccacggcatcggcgagcgccggggcttcgagccgaag
gcccagtcccacgcctacgaggcgctcgcgacctggggcctgccgacctccgaccaggtg
cgcgtggtgggcacgctcaccgaggtggaggcctacatcgagaacgccggcgagcaccgg
cactcgatcgtcccctacgagatcgacggcgtcgtggtgaaggtcgacgacgtgtccctg
cagcgccggatgggctcgacgtcgcgggcgccgcggtgggccatcgcgttcaagtacccg
cccgaggaggtcaacgcccgcctcctcgccatcgaggtgcaggtcggccgcaccggccgg
gtctcgccgttcgggcggatggagcccacccgggtggccggctcgacggtggagaaggcc
acgctccacaacgcccacgaggtacgccgcaaggacgtgcgccccggcgacaccgtcatc
ctgcgcaaggccggcgacgtcatcccggagatcgtcggtcccgtcctggcgctgcgcccc
gaggggctggccgagtgggtgatgcccacggagtgccccgcctgcggcaccacgctggcc
cagcagaaggagggcgaccgcgacctccgctgcctcaaccacgaggcctgtcccgcgcag
gtgcgcgagcgggtcttccacgtcgcgggtcgcggcgccttcgacatcgagggcctcggc
tacgaggcggcgtccgcgctgctggcctcgggcgccatcaccaacgagggcgacgtgttc
gacctcgacgaggcccgcctgctgacgaccccgctgttcacccgggcgcccaagaagggc
gaggagggcacgcacgtgtccccggacgggtcacgggcgctcaccgccaacggtcagaag
ctgctcgccaacctcgacaaggcgacgggcgcagcgctgtggcgcgtgctggtcgcgctg
tccatccggcacgtcggccccacggccgcccgggcgctggcccaggagttcggctcgtgg
caggcgatcgcggcagccaccgaggaggagctcgccgccaccgagggcgtcgggcccacc
atcgccgcggcggtcgtcgagtggcgcgaggtgccgtggcaccaggagatcgtggccaag
tggtcgggccacctgccgctggccgacgagcgcgacgagtccgtgccgcgcaccctcgag
gggctcacgatcgtcgcgaccgggtccctccagggctacacccgcgactcggtcaaggag
gcgatcatcacccgcggcggcaaagcggccggatcggtgtcgaagaagaccgactacgtc
gtcgtgggcgagaacgccgggtccaaggccgagaaggccgagcagctcggggtgccggtc
ctcgacgaggagcagttcacccggctgctggagcaggggcctgccggcctgtcctga
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