Natronomonas salina: HWV07_12960
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Entry
HWV07_12960 CDS
T07280
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nsal
Natronomonas salina
Pathway
nsal03030
DNA replication
nsal03410
Base excision repair
nsal03420
Nucleotide excision repair
nsal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HWV07_12960 (ligA)
03410 Base excision repair
HWV07_12960 (ligA)
03420 Nucleotide excision repair
HWV07_12960 (ligA)
03430 Mismatch repair
HWV07_12960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsal03032
]
HWV07_12960 (ligA)
03400 DNA repair and recombination proteins [BR:
nsal03400
]
HWV07_12960 (ligA)
Enzymes [BR:
nsal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HWV07_12960 (ligA)
DNA replication proteins [BR:
nsal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HWV07_12960 (ligA)
DNA repair and recombination proteins [BR:
nsal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HWV07_12960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HWV07_12960 (ligA)
MMR (mismatch excision repair)
DNA ligase
HWV07_12960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HWV07_12960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
HHH
BRCT
HHH_3
DNA_ligase_ZBD
5_3_exonuc
HHH_8
BRCT_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QLD89886
LinkDB
All DBs
Position
2492033..2494108
Genome browser
AA seq
691 aa
AA seq
DB search
MDEPQDNPYVWDPPLDFTPVEELDEAAAREQVELLREAIRYHDERYYQRADPAVSDRTYD
RLFSRLQDLEAEFDLQSETSPTQRVGGEPLDELETVEHVTPMLSIDSSVEEADVREFDRR
VRDRLASEGYEGAVDYLCEPKFDGLSVELVYEDGELQRAATRGDGQRGDDVTANVRTIRS
VPLELRGDHPDFLAVRGEVFMPKDAFQQYNRERIERGDDPFANPRNAAAGTLRQLDPSIT
AERPLDCFVFDVLDDGGYGFETRVEEHETVAEWGFRVDDHTRPVDGVDGAVAFRDEMLDA
RDDLDYEIDGTVIKIDDHDACDLLGSTARAPRWAYAYKFPARSEVTTVRDVVVQVGRTGR
LTPVALLDPVEVGGVEVSRASLHNPEQIAELGVALGDKVRLKRAGDVIPYVEEVVESEGD
GHFEFPDQCPVCDSAVEREGPMAFCTGGVACPAQLRRAVQHYASRTGLDVEGLGEKAVDQ
LIDEGLVEGLPDLYDLTVAELADLEGWGERSAENLLAELEASKEPPLADFLSALGVPEVG
PTTAADIARHFGTLDAVMDASAEELQAVDGVGPTVAEEIAEFFDSERNREVVAALRERGV
EPQAAETAGDALEGLTFVFTGSLEDLTRGEAQELVEANGGSATSSVSGNTDYLVAGENPG
QSKRDDAEANDVPIVDRTEFEALLDEHGIDV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggacgagccgcaggacaacccctacgtctgggacccgcccctcgacttcacgcccgtc
gaggagctcgacgaggcggcggcccgcgagcaggtcgagttgctccgcgaggcgatccgc
taccacgacgagcggtactaccagcgggccgacccggccgtctccgaccgcacgtacgac
cggctcttctcgcgcctccaggacctcgaggccgagttcgacctgcagtccgagacgagc
ccgacgcagcgcgtcggcggcgagccgctcgacgaactcgagaccgtcgagcacgtcacg
ccgatgctgtcgatcgactcctcggtcgaggaggccgacgtccgcgagttcgaccggcgg
gtccgcgaccggctggcgagcgaggggtacgagggggccgtcgactacctctgcgagccg
aagttcgacggcctctccgtcgaactggtctacgaggacggcgaactgcagcgggcggcc
acccgcggcgacggccagcgcggcgacgacgtgaccgccaacgtccggacgatccggtcg
gtgccgctggagctccgcggcgaccaccccgacttcctcgcggtccgcggcgaggtgttc
atgccgaaggacgccttccagcagtacaaccgcgagcgcatcgagcgcggcgacgacccc
ttcgccaacccccggaacgcggccgccggcaccctccgacagctcgacccctccatcacc
gccgagcggccgctggactgcttcgtcttcgacgtgctcgacgacggcggctacggcttc
gagacgcgggtcgaggaacacgagaccgtcgccgagtgggggttccgcgtcgacgaccac
acgcgaccggtcgacggcgtcgacggcgccgttgcgttccgcgacgagatgctcgacgct
cgagacgacctcgactacgagatcgacgggaccgtgattaagatcgacgaccacgacgcc
tgcgacctgctggggtcgaccgcgcgggcgccgcggtgggcctacgcctacaagttcccc
gcgcggagcgaggtgacgaccgtccgggacgtcgtcgtccaggtcggccggacgggccgg
ctgacgcccgtggcgctgctcgaccccgtcgaggtcggcggcgtggaggtctctcgggcc
tccctgcacaaccccgagcagatcgccgagctcggcgtcgcgctcggcgacaaagtccgg
ctcaagcgtgcgggcgacgtcatcccctacgtcgaggaggtcgtcgagtccgagggcgac
ggccacttcgagttccccgaccagtgtccggtctgcgacagcgcggtcgagcgggagggc
ccgatggcgttctgcaccggcggggtggcctgccccgcccagctccgccgggccgtccag
cactacgcctcgcggaccggactggacgtcgagggcctcggcgagaaggccgtcgaccag
ctgatcgacgagggactggtcgaggggctgccagacctctacgacctgaccgttgcggag
ctggccgacctcgagggctggggcgagcgcagcgccgagaacctgctcgccgaactggag
gccagcaaggagccgccgctggcggacttcctgtcggcgctaggcgtccccgaggtcggc
ccgacgaccgcggccgacatcgcacgacacttcgggacgctcgacgcggtgatggacgcg
tccgccgaggagctccaggcggtcgacggcgtcggtccgaccgtggccgaggagatcgcc
gagttcttcgacagcgagcggaaccgcgaggtcgtcgcggcgctccgcgagcgcggcgtc
gaaccgcaggcggccgagaccgcgggtgacgcgctcgagggactgacgttcgtcttcacc
gggtcgctggaggacctcacccgcggcgaggcccaggagctggtcgaggccaacggtggg
tcggcgacctccagcgtctccggcaacacggactacctcgtcgccggcgagaacccgggg
cagagcaagcgcgacgacgccgaggccaacgacgtcccgatcgtcgaccggacggagttc
gaggcgctcctcgacgaacacggcatcgacgtgtag
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