Neisseria subflava: FAH66_05650
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Entry
FAH66_05650 CDS
T06236
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nsf
Neisseria subflava
Pathway
nsf03030
DNA replication
nsf03410
Base excision repair
nsf03420
Nucleotide excision repair
nsf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FAH66_05650 (ligA)
03410 Base excision repair
FAH66_05650 (ligA)
03420 Nucleotide excision repair
FAH66_05650 (ligA)
03430 Mismatch repair
FAH66_05650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsf03032
]
FAH66_05650 (ligA)
03400 DNA repair and recombination proteins [BR:
nsf03400
]
FAH66_05650 (ligA)
Enzymes [BR:
nsf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FAH66_05650 (ligA)
DNA replication proteins [BR:
nsf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FAH66_05650 (ligA)
DNA repair and recombination proteins [BR:
nsf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FAH66_05650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FAH66_05650 (ligA)
MMR (mismatch excision repair)
DNA ligase
FAH66_05650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAH66_05650 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QCL71016
LinkDB
All DBs
Position
1151086..1153554
Genome browser
AA seq
822 aa
AA seq
DB search
MNPTAQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQ
RVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKPEYVI
EPKFDGLAISLLYRDGILTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEIRG
EVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQQG
GFIAEEHLQELSYCKDLGFSLPDGNFGCFPNIDEVLAFYEQMQQKRPTLPYEIDGMVVKV
NSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGV
TVTNATLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETKISVSDGLQDD
LFAETPSETRSEPLHKPYRLPTHCPICHSEIEREEGEAVARCSGGMLCQAQRAQGLIHFA
SRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKASANEEEPSNSEV
EDFKSEIGNTLLAKNIKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLA
QAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQEAQQAMIDELLAVGVAPQSQAVT
IPPLRHAEPQRWIARLPDFKISETKALALWELAGQSIEGLQSDKALPADWQTWRSKPQNA
ALLENMKTFFDQKLPELQNETISDGINEAVAGKTFVLTGTLPTLKREQAQAMIEAAGGKV
SGSVSKKTDYVVAGEAAGSKLEKAQTLGVAVLSEEELLTLLG
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaaccgcacaacgtatcaaatacctgaccgacctcctcaaccgctacgcctac
gaatactacaccctagacgcgcccagcgtacccgatgccgaatacgacaaattgttccgc
gagctcgaagcattggagttgaatcaccctgagttgaaactgcccgacagcccaacccag
cgcgtcggtggcgagcctttggcaggctttgatgaagtgcgtcatgaagtacctatgttg
tcactaaccaacgccttctcgccacaagatgaaaacggcgtgtttgaccatgccgaaatg
tacgcttttgatgagcgcgttcgtggcggtttaaatggagaaaaaccggaatacgttatc
gagcctaaatttgacggtctggccatcagcctgctgtaccgcgacggcatattgactcaa
gcggcaacccgtggcgacggcacaacaggtgaagacgttacccaaaacgtcaaaaccgta
tccaacatccccctgcgcctgcatggagaaaatattcccgagcttatcgaaatacgcggc
gaagtcctgatgctcaaagccgattttgccgccttaaacgcacgacaggctgaaaacgga
caaaaacctttcgccaacccgcgcaatgccgccgccggcagtctgcgccaacttgattca
cgcattacggcacagcgcaaactgcatttcttcccctattccattgcccgacaacaaggc
ggttttatcgcagaagaacacctgcaagagctgagctactgtaaagatcttggcttcagc
ctgcctgatggtaatttcggctgtttcccaaatatcgacgaagtattggcattttacgag
caaatgcagcaaaaacgccctaccctgccttacgaaatcgacggcatggtggtcaaagtc
aacagtctggcacaacaagaaaaactgggcttcatctcacgcgcgccacgttgggccatt
gcccacaaatttcctgctgaagaagcattgaccattgtcgaagccattgatgtacaaatc
gggcgcaccggcgcagtaacccccgtcgcccgcctgcaacctgtattcgtcggcggcgtt
accgttaccaacgccaccctgcacaatcaggacgaagtatcgcgcaaagatgtacgcgtt
ggcgatacagttgtcgtgcgccgcgcaggagatgtgattcccgaggtggtgcgcgtgatt
tttgaacgccgcccaatgcaggagaccaagatttccgtttcagacggcctgcaagacgat
ttgtttgctgaaacaccttctgaaacccgatccgaaccgcttcacaaaccctaccgcctg
cccacccattgccctatctgtcacagcgaaatcgaacgcgaagaaggcgaagcggttgcc
cgatgcagtggcggtatgctttgccaggcacaacgcgcgcaaggtttaatccactttgcc
tcacgcaaagccatggatatcgacggacttggtcaaaaacaaatcgagcagctggtcgca
caagatttggttcgtcatttcgccgacctctaccgcctcgatattccaaccctgcaaaaa
atgaaggaaacagcggataaagcatcggctaatgaggaagaaccatcaaacagtgaggtt
gaagactttaaaagcgagatcggtaatactctgcttgccaaaaacattaaaaaacagccg
accaaatgggcggaaaacatccttgcaggcatagaagccagcaaaacacccgaacttgcc
cgcttcctttttgccctcggcatccgtcacgtcggcgaacgcaccgccaaaacgctggca
caggcattcggcacactggaaaacgtccgccatgcacccgaacccatcctcgcctgcctg
cctgatatcggcacggtggttgcccgctccatcgctcacttttttgcccaagaagcacaa
caggcgatgatagacgagctgctggctgtaggtgttgccccgcaaagccaggctgtcact
atcccgccgttgcgccatgccgaaccgcaacgctggattgcccgcctgcctgattttaaa
atcagcgaaaccaaagcattggccttgtgggaacttgccggacaaagcatagaaggcttg
caaagcgacaaagcgttgcctgccgattggcaaacatggcgcagtaaaccgcaaaacgca
gccctgcttgaaaatatgaaaactttctttgatcaaaagctgcctgagcttcaaaatgaa
actatttcagacggcattaatgaggcagtagcaggtaaaacctttgtattaacagggact
ttacccacgctaaaacgagaacaagcccaagccatgattgaggctgcaggcggtaaagtt
tccggcagcgtatctaaaaaaaccgactatgttgtcgccggagaagctgcaggcagtaaa
ttggaaaaagcccaaactttgggcgtggctgtattaagcgaagaagaattactgacgttg
ctgggataa
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