Neotabrizicola shimadae: JO391_08345
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Entry
JO391_08345 CDS
T08148
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nsm
Neotabrizicola shimadae
Pathway
nsm03030
DNA replication
nsm03410
Base excision repair
nsm03420
Nucleotide excision repair
nsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JO391_08345 (ligA)
03410 Base excision repair
JO391_08345 (ligA)
03420 Nucleotide excision repair
JO391_08345 (ligA)
03430 Mismatch repair
JO391_08345 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsm03032
]
JO391_08345 (ligA)
03400 DNA repair and recombination proteins [BR:
nsm03400
]
JO391_08345 (ligA)
Enzymes [BR:
nsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JO391_08345 (ligA)
DNA replication proteins [BR:
nsm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JO391_08345 (ligA)
DNA repair and recombination proteins [BR:
nsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JO391_08345 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JO391_08345 (ligA)
MMR (mismatch excision repair)
DNA ligase
JO391_08345 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JO391_08345 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QYZ71495
UniProt:
A0A8G0ZXW5
LinkDB
All DBs
Position
1739152..1741566
Genome browser
AA seq
804 aa
AA seq
DB search
MAAQKPVEDLSEAEAAAELARLAGLIGAANRAYHTLDAPEISDADYDAMKRRNAAIEARF
PGLKRADSPSDRVGGEVADGFGKIRHAVPMLSLENAFEDQEVFDFDERVRRYLNLEGVIA
YTAEPKIDGLSLSLRYEAGRLVQAATRGDGEVGENVTANALTIGDIPDTLTGPVPEVLEV
RGEVYMSHADFAALNARQAEAGERLFANPRNAAAGSLRQLDPAITLARPLRFFAYAWGAL
SEPLAATQKGAIERLHGLGFQTNDRTVLCEGPEAMLAQYRAIEAARATLGYDIDGVVYKV
NDLGLQARLGFRSSTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLKPVTVGGV
VVSNATLHNEDYIAGRDARGEAIRGGKDIRVGDWVQVYRAGDVIPKVADVDLGKRPEGAL
PYRFPETCPVCGSLAVREPGDAVRRCTGGLSCAAQAIEKLKHFVSRAAFDIEGLGAKQVE
LFHRLNWIAEPADIFTLQARDAAGAKMLGTDAGAFLAGQLRLGAAEEDPEASGLSTWREV
LAPMGFEVGPDLPAVAGALARLSATPLAQVKGWGETSVANLFRAIQERRRIGLARLIFAL
GIRHVGEVAAADLARHFGSWDALVAAVDLARPAALAHRAADAAEEAERRVAAAEGRRPKV
SEVRKAALAGQDGAALAAWTDLVTTDGIGPVLALSLSDAMANAHERAAIDRLAALLEVLP
PEARATASPVAGMTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSAKTDLVVAGPGAGSK
AKDAERLGVRMIDEDAWLELIAGA
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcagaagcctgtcgaggacctgagcgaggcggaagctgcggcggagctggcg
cggctggccgggctgatcggggcggcgaaccgggcctatcacacgctggacgcgcccgag
atttccgacgccgactacgatgcgatgaagcggcgcaatgccgccatcgaggcgcggttt
ccggggctgaagcgggccgacagcccctcggaccgggtgggcggcgaggtggcagacgga
ttcggcaagatccgtcatgccgtgccgatgctgagcctggaaaatgccttcgaggaccag
gaggtctttgacttcgacgaacgggtgcggcggtatctgaacctggagggcgtgatcgcc
tataccgccgagccgaagatcgacgggttgtcgctgtccttgcgctatgaggccgggcgg
ctggtgcaggcggcgacgcgcggcgatggcgaggtgggcgagaatgtcacggccaatgcc
ctgacgatcggggacatccctgacaccctgaccgggccggtgcccgaggttctggaggtc
aggggcgaggtctacatgagccacgcggactttgccgcgctgaacgcccggcaggccgag
gcgggcgagcggctgtttgccaacccgcgcaatgcggcggcgggcagcctgcggcagctg
gaccccgccatcaccctggcgcggcccctgcggttctttgcctatgcctggggggcgctg
tcggaaccgctggctgccacgcagaagggcgcgatcgagcgcctgcacgggctgggcttt
cagaccaacgaccggaccgtgctgtgcgaggggcctgaggccatgctggcgcagtaccgc
gccatcgaggcggcgcgggcgaccctgggctatgacatcgacggcgtggtctacaaggtg
aacgaccttgggttgcaggcgcggcttggctttcgttcctctaccccgcgctgggcgatc
gcgcacaagttcccggccgagctggcctggacgcggctggaggccatcgacatccaggtc
ggccgcaccggagcactatcgccggtggcgcgacttaagccggttacggtgggcggcgtg
gtggtgtcgaatgccacgcttcacaacgaggattacatcgccgggcgcgatgcgaggggc
gaggcgatccgcggcggcaaggacattcgcgtgggcgactgggtgcaggtctatcgcgcg
ggggatgtgatccccaaggtggccgatgtggacctgggcaagcggccggagggcgccctg
ccctaccggttccccgagacctgcccggtctgcggctctttggcggtgcgcgagccgggt
gacgcggtgcggcgctgcaccggcgggctgtcctgcgcggcgcaggccatcgagaagctg
aagcatttcgtcagccgcgccgcctttgacatcgaggggctgggggcaaagcaggtggag
ttgttccaccggctgaactggatcgcggagcctgcggacatcttcaccctgcaggcgcgg
gatgctgcgggggccaagatgctgggcaccgatgccggggccttcctggccgggcagctg
cgccttggcgcggcggaggaagatcccgaggcgagcgggctgtcgacctggcgcgaggtg
ctggcgccgatggggttcgaggtggggccggaccttcccgccgtggcgggagcgttggcg
cggctgtcggccacgccgctggcgcaggtgaagggctggggcgagacctcggtggccaac
ctgttccgcgcgatccaggagcggcggcggatcggcctggcgcggctgatcttcgcgctt
ggcatccgtcacgtgggcgaggttgcagcggcggatctggcgcggcatttcggaagctgg
gacgcgctggtggcggcggtcgatctggcgcggcccgccgcgctggcgcatcgcgcggcg
gatgcggcggaagaggccgagcggcgggtggcggcggccgagggccggcgaccgaaggtg
agcgaggtacgcaaggcggcgctggcgggtcaggatggcgcggcgctggcggcctggacc
gatctggtgacgaccgatggtatcgggccggtgctggcgctgtccctgtcggatgccatg
gccaatgcgcatgagcgcgcggcgatcgaccggctggccgcgctgctggaggtgctgccg
ccggaggcgcgcgccacggcctcgccggtggcggggatgaccgtggtcttcaccggcacg
ctggagaagatgacgcgggccgaggccaaggcgcgggccgaggccctgggggccaaggtc
tcgggctcggtcagtgccaagaccgatctggtggtggccgggccgggcgcgggcagcaag
gccaaggatgcggagcgtctgggggtgcggatgatcgacgaggacgcctggcttgagctg
atcgcgggcgcatga
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