Nodularia spumigena: BMF81_00795
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Entry
BMF81_00795 CDS
T05403
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nsp
Nodularia spumigena
Pathway
nsp03030
DNA replication
nsp03410
Base excision repair
nsp03420
Nucleotide excision repair
nsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BMF81_00795 (ligA)
03410 Base excision repair
BMF81_00795 (ligA)
03420 Nucleotide excision repair
BMF81_00795 (ligA)
03430 Mismatch repair
BMF81_00795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsp03032
]
BMF81_00795 (ligA)
03400 DNA repair and recombination proteins [BR:
nsp03400
]
BMF81_00795 (ligA)
Enzymes [BR:
nsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BMF81_00795 (ligA)
DNA replication proteins [BR:
nsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BMF81_00795 (ligA)
DNA repair and recombination proteins [BR:
nsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BMF81_00795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BMF81_00795 (ligA)
MMR (mismatch excision repair)
DNA ligase
BMF81_00795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BMF81_00795 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
PTCB-BRCT
RNA_pol_A_CTD
Zn_ribbon_NUD
Auto_anti-p27
Dna2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AVZ29849
UniProt:
A0A2S0Q5Y6
LinkDB
All DBs
Position
complement(948567..950603)
Genome browser
AA seq
678 aa
AA seq
DB search
MIQSQSEVKRVEELRQLLQQASYAYYVLDAPMMEDAVYDQLYRELQELEIKYPEFITPDS
PTQRVGEKPATHFTSVRHNIPLYSLENAFNIDELQIWDQRWRRQTPKIEAVEYVSELKID
GSALALTYENGILVRGVTRGDGVVGEDITQNVRTIRSIPLRLNFAGAKSLEKIEVRGEVF
LPLEVFKQINAERQKAGEHIFANPRNAAAGTLRQLDPRIVAQRRLDFFAYTLHISGMDDA
SIANTQWEALELLEKMGFPVNPNHKLCRSLTEVAQYYQSWDTKRLNLPYMTDGVVVKLNP
FKLQEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTV
SRATLHNSDRILQLDIRIGDTVIVRKAGEIIPEVVRVLTELRPDDTVPFIMPTHCPVCGQ
PVVRESGEAVTRCVNASCAAILRGEIEHWVSRDALDIKGMGEKLVHQLVDRHLVNSVADL
YDLTTERLCALERMGQKSAQKLIDAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTQKYPT
VEELATAKQSDIAGIYGIGAEIAQSVYQWFRIDANHVLIERLKAEGLQLAATEETTTAAD
VNQNLAGKTFVITGTLPSLSRDEAKALIQKAGGKVTNSVSKKTDYLLVGEDAGSKLEKAQ
ALGITQLSEALLLEMLSN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatacaaagtcagtcggaagttaagcgtgtagaagaattgcgccagttgttgcaacaa
gctagctatgcttattatgtcttagatgctcccatgatggaggatgctgtctatgaccag
ctttatcgcgaattacaagagttagaaattaaatatccagaattcattacacctgatagt
ccgactcagcgcgtgggtgagaaaccagctacacattttacttcggtacgccataatatt
cctctctacagtctggaaaatgcttttaatattgatgaattgcaaatatgggatcagcgt
tggcggcgacaaacaccgaaaatagaagcggtggaatatgtctcggaactcaaaattgat
ggttcggctttggctttgacttatgaaaatggtattttggttcgaggtgtaactagaggt
gatggggtagtgggtgaagatattacccaaaatgtgcggacaattcgttctattcccttg
cgtttgaatttcgccggtgctaaaagtttagaaaagatagaagtacgcggtgaggtgttt
ttacctttggaagtgtttaaacaaattaacgcggaaagacaaaaagccggtgaacatatt
tttgctaatccccgcaatgccgcagctggtacactcagacaattagacccccgcattgtc
gcccagcgacgcttggatttctttgcttacacactgcacatttctggtatggatgatgcc
agtattgctaatactcaatgggaagctttggaattattggaaaaaatgggttttccagtt
aaccccaatcacaaactctgtcgttcattaacagaagttgcccaatattatcaatcttgg
gatacaaaaagactcaatttaccttacatgactgatggggtggttgtcaagttaaatcct
tttaagttacaagaacagcttggttttactcagaaattccctcgatgggctgtagctttg
aagtacgcagccgaggaagcgccgacacgggtggaaaatatctctgtgaatgtgggacgc
actggggcgttaactcctttggcccagatgcgcccggtacaattagcgggaacgactgtt
tctcgcgctactttacataatagcgatcgcatcctgcaattagatatccgcattggtgat
actgtgattgttcgcaaagctggggaaattatcccggaggtggtgcgggtattaacagaa
cttcgtcccgatgataccgtcccttttattatgcccacccattgcccagtctgcggtcaa
ccagtggtgcgagaatcaggtgaagcggtgactcgctgcgttaatgcttcctgtgcggct
attctcagaggcgaaattgaacattgggtgagtcgggatgctttggatattaaaggtatg
ggggaaaaactggtacatcaactagtagatagacatttggtgaattctgtggctgattta
tatgacttgacaacagagcgattatgtgcattggaaaggatgggacaaaaatcagcccaa
aaattgattgatgcgatcgcccaatcaaaaaaccaaccttggtctagggtattatatggt
ttaggcatccgtcacgttggcagtgtcaatgctcaattattaactcagaaatatcccaca
gttgaagagttagccacagcgaagcaatcagatatagccggaatttacggtatcggtgcg
gaaattgctcaatctgtatatcaatggttccgcattgacgcgaatcatgttttgattgaa
cgtttaaaagcagaaggattacaattagctgctactgaggaaaccaccacagctgctgat
gttaatcaaaacttagctggtaaaacctttgtaattactggcactctgcccagtttatca
cgggatgaagctaaggcgttaattcaaaaagctgggggtaaagtaactaattcggtgagt
aaaaaaaccgattatttgcttgtaggtgaagacgctggttctaaattagagaaagcgcaa
gcgttgggaattacgcaattaagtgaagctctgttgttggagatgttgtcaaattaa
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