Nodularia sphaerocarpa: BDGGKGIB_04229
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Entry
BDGGKGIB_04229 CDS
T08134
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nsph
Nodularia sphaerocarpa
Pathway
nsph03030
DNA replication
nsph03410
Base excision repair
nsph03420
Nucleotide excision repair
nsph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BDGGKGIB_04229 (ligA)
03410 Base excision repair
BDGGKGIB_04229 (ligA)
03420 Nucleotide excision repair
BDGGKGIB_04229 (ligA)
03430 Mismatch repair
BDGGKGIB_04229 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsph03032
]
BDGGKGIB_04229 (ligA)
03400 DNA repair and recombination proteins [BR:
nsph03400
]
BDGGKGIB_04229 (ligA)
Enzymes [BR:
nsph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BDGGKGIB_04229 (ligA)
DNA replication proteins [BR:
nsph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BDGGKGIB_04229 (ligA)
DNA repair and recombination proteins [BR:
nsph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BDGGKGIB_04229 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDGGKGIB_04229 (ligA)
MMR (mismatch excision repair)
DNA ligase
BDGGKGIB_04229 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BDGGKGIB_04229 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
zf-NADH-PPase
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ULP74560
LinkDB
All DBs
Position
5032459..5034495
Genome browser
AA seq
678 aa
AA seq
DB search
MIQIQSEVKRVEELRQLLQQASYAYYVLDTPMMEDAVYDQLYRELQELEIKYPELITPDS
PTQRVGEKPATHFSSVRHNIPLYSLENAFNIDELQIWDQRWRRQTPKIEAVEYVSELKID
GSALALTYENGVLVRGVTRGDGVVGEDITQNVRTIRSIPLRLNFAGAKSLEKIEVRGEVF
LPLEVFKQINAERQKAGENLFANPRNAAAGTLRQLDPRIVARRRLDFFAYTLHISGMDDA
SIANTQWEALDLLEKMGFPVNPNHKLCASISEVAEYYQSWDTKRLNLPYMTDGVVVKLNP
FKLQEQLGFTQKFPRWAVALKYAAEEAPTRVENISVNVGRTGALTPLAQMRPVQLAGTTV
SRATLHNSDRILELDIRIGDTVIVRKAGEIIPEVVRVLKELRPDDTQPFIMPTHCPVCGQ
PVVRESGEAVTRCVNASCAAILRGEIEHWVSRDALDIKGMGEKLVHQLVDRHLVHSVADL
YDLTTERLCVLERMAQKSAQKLIDAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTQKYPT
VEELASAKQSDIAGIYGIGAEIAQSVYQWFRIDANHVLIERLKVAGLQLAANEETTTAAD
GNQKLAGKTFVITGTLPSLSRDEAKALIQKAGGKVTNSVSKKTDYLLLGEDAGSKLEKAQ
GLGITQLSEALLLEMLSE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatacagattcagtcggaagtcaagcgtgtagaagaactgcgccagttgttgcaacaa
gctagctatgcttattatgtcctagatactccaatgatggaagatgctgtctatgaccag
ctttatcgagaattacaagagttagaaattaaatatcccgaattaattacacctgatagt
cctactcagcgcgtgggtgagaaaccagctacacatttttcttcggtacgtcataatatt
cctctgtacagtttggagaatgcttttaatattgatgaattgcaaatatgggatcagcgt
tggcggcgacaaacaccgaaaatagaagcggtggaatatgtctcggaactcaaaattgat
ggttcggctttggctttgacttatgaaaatggcgttttagttagaggtgtcactaggggt
gatggggtagtgggtgaagatattacccaaaatgtgcggacaattcgctctattcccttg
cgtttgaatttcgccggtgctaaaagtttagaaaagatagaagtacgtggtgaggtgttt
ttacctttggaagtgtttaaacaaattaacgcggaacgacaaaaagccggtgaaaattta
tttgctaatccccgcaatgccgcagctggtacactcaggcaattagacccccgcattgtc
gcccggcgacggttggatttctttgcttacacactgcacatttctggtatggatgatgcc
agtattgctaatactcaatgggaagctttggatttattggaaaaaatgggttttcccgtt
aaccccaatcataagctctgtgcttcgatctcagaggtagcagaatattatcaatcttgg
gatacaaaacggcttaatctaccttacatgactgatggggtggttgtcaagttaaatcct
tttaagttacaagaacagcttggttttacgcaaaagtttcccagatgggctgtagctttg
aagtacgcagctgaggaagcgccgacaagggtggaaaatatttcggtgaatgtgggacgc
actggggcgttaacgcctttggcccaaatgcgccctgtacaattagcgggaacgactgtt
tctcgcgctactttacataatagcgatcgcatcctggaattagatatccgcattggtgat
actgtcattgttcgcaaagctggggaaattatcccggaagtggtgcgggtattaaaagaa
cttcgtccagatgatacccaaccctttattatgcccacccattgtcctgtctgcggtcaa
cccgtggtgcgagaatcaggtgaggcggtgactcgctgcgttaatgcttcctgtgcggct
attctcagaggcgaaattgaacattgggtgagtcgcgatgctttggatattaaaggtatg
ggggaaaagctggtacatcaacttgtagatcgacatttggtgcattctgttgctgattta
tatgacttgacaacagaaagattatgtgtattggaaaggatggcacaaaaatcagcccaa
aaattgattgatgcgatcgcccaatcaaaaaaccaaccttggtctagggtattatatggt
ttaggcatccgtcacgttggcagtgtgaatgctcaattattaactcagaaatatcccaca
gttgaagagttagcttcagccaagcaatcagatattgcgggaatttacggtattggtgca
gaaattgctcaatctgtatatcagtggttccgcattgacgcgaatcatgttttgattgaa
cgtctcaaagtcgcaggattgcaattggctgctaatgaggaaaccacaacagctgctgat
ggtaatcaaaagttagctggtaaaacttttgtgattactggtactcttccgagtttatca
cgagatgaggctaaggctttaattcaaaaggctgggggtaaggtgactaattcggtgagt
aaaaaaactgattatttgctattaggtgaagatgctggttctaagttggaaaaggcgcaa
gggttgggaattactcagttgagtgaggcgcttttgttggagatgttgtcagagtaa
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integrated database retrieval system
