Nocardia sputorum: IFM12276_13410
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Entry
IFM12276_13410 CDS
T09151
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nspu
Nocardia sputorum
Pathway
nspu03030
DNA replication
nspu03410
Base excision repair
nspu03420
Nucleotide excision repair
nspu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nspu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IFM12276_13410 (ligA)
03410 Base excision repair
IFM12276_13410 (ligA)
03420 Nucleotide excision repair
IFM12276_13410 (ligA)
03430 Mismatch repair
IFM12276_13410 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nspu03032
]
IFM12276_13410 (ligA)
03400 DNA repair and recombination proteins [BR:
nspu03400
]
IFM12276_13410 (ligA)
Enzymes [BR:
nspu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IFM12276_13410 (ligA)
DNA replication proteins [BR:
nspu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IFM12276_13410 (ligA)
DNA repair and recombination proteins [BR:
nspu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IFM12276_13410 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IFM12276_13410 (ligA)
MMR (mismatch excision repair)
DNA ligase
IFM12276_13410 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IFM12276_13410 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
DUF7575
Motif
Other DBs
NCBI-ProteinID:
BDT98312
UniProt:
A0ABM8CTM5
LinkDB
All DBs
Position
1484861..1487044
Genome browser
AA seq
727 aa
AA seq
DB search
MLQGGDVREHGGSLSVASANVRWVSDSDSAAAPATAEQRVEWQRLADEVREHQFRYYVRD
APIISDGEFDALLRRLQAMEDEHPDLRTPDSPTQLVGGGFATDFTAVDHLERMLSLDNVF
DIDELRSWAARVEAETGPDLHYLCEVKIDGVALNLVYQNGRLVRGATRGDGRTGEDVTLN
ARTIDDIPGELTPSDEFPIPQLLEVRGEVYFRLEDFETLNAAIVAEGKPPYANPRNTAAG
SLRQKDPSVTARRRLRMICHGFGRIEGYTPTSQYEAYRALAAWGLPVSEHTRRVQGIDAV
IERVAYWGEHRHDIEHEIDGQVIKVDETALQRRLGSTSRAPRWAIAYKYPPEEATTKLLN
IQVNVGRTGRVTPFAVMEPVSVAGSTVAMATLHNAAEVKRKGVLIGDTVTIRKAGDVIPE
VLGPVVDARPEDAREFVMPTHCPECGTELRPEKEGDADIRCPNQQFCPAQLRERVYHVAG
RGAFDIEALGYEGAIDLLKSGAITDEGDLFDLDEATLLTTSLYANKNGSLSANGKRLLEN
LAVAKDRPLWRVLVGLSIRHVGPTAARALAAEFGSLDRIEAASGEELAAADGVGPTIAAA
VAEWFTVDWHRAVVAKWRAAGVRMEDERDESIERNLEGLSIVVTGSLQGFTRDGAKEAIL
RRGGKAASSVSKKTAFVVVGDAPGSKAAKAEELGVPILDEEGFQRLLAGGPDAVAPETAA
EDADAEE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtgctccagggcggcgacgtgcgcgaacacggcggctcactgtcggtggcctccgctaat
gtgcgatgggtgagtgacagcgacagcgcggcggccccggcgacggcagagcagcgggtg
gagtggcagcgactcgcggacgaggtgcgtgagcatcagttccgctactacgtccgggac
gcgccgatcatctccgacggcgagttcgacgcgctgttgcggcggttgcaggccatggag
gacgaacatccggacctgcgcacgccggattcgccgactcagctcgtcggcggcggcttc
gcgaccgatttcaccgctgtcgaccacctcgagcggatgctgtcgctggacaacgtgttc
gacatcgacgagctacgctcctgggccgcccgggtggaggcggagaccgggccggacctg
cactacttgtgcgaggtgaagatcgacggcgtcgcgctgaacctcgtctaccagaacggg
cggctggtgcgcggcgccacccgaggcgacggacgcaccggcgaggacgtgacgctcaac
gcgcgcaccatcgacgacatccccggcgagctgacccccagcgacgagttccccatcccg
cagctgctggaggtccgcggcgaggtgtacttccggctggaggacttcgagacgctcaac
gccgccatcgtggccgagggcaagccgccctatgccaatccgcgcaacacggcggccggt
tcgctgcgtcagaaggatccgtcggtcaccgcgcggcgcaggttgcgcatgatctgccac
ggcttcggccgcatcgagggttacacgccgacctcgcagtacgaggcgtaccgagcgctc
gccgcgtggggcctgccggtgtccgagcacaccaggcgggtgcagggcatcgacgcggtg
atcgagcgggtcgcctactggggcgagcaccggcacgacatcgagcacgagatcgacggc
caggtcatcaaggtcgacgagaccgcgctgcaacgccgtctcggctccacctcgcgcgcg
ccgcgctgggcgatcgcctacaagtacccgcccgaggaagcgacgaccaagctgctgaac
atccaggtgaacgtcggccgcaccggccgggtgacgccgttcgcggtgatggagccggtg
tccgtcgcgggctccacggtcgcgatggccaccctgcacaacgccgccgaggtcaagcgc
aaaggcgtgctgatcggtgacacggtcaccatccgcaaggcgggcgacgtgattcccgag
gtgctggggccggtggtggacgcgcgccccgaagacgcgcgggaattcgtcatgccgacg
cactgtcccgaatgcggcaccgaactgcgtccggagaaggagggcgacgccgacatccgc
tgcccgaaccagcagttctgccccgctcagttgcgcgagcgcgtctaccacgtggccggg
cgcggcgccttcgacatcgaggccctcggttacgaaggcgcgatcgatctgctgaagtcc
ggcgccatcaccgacgagggcgacctgttcgacctggacgaggcgacattgctcaccacc
tcgctctacgccaacaagaacggcagcctctccgccaacggcaagcggctgctggagaac
ctggccgtggccaaggaccggccgctgtggcgggtgctggtcggcctgtccatccggcac
gtcggccccaccgctgcgcgcgcgctcgccgccgaattcggcagcttggaccgcatcgag
gcggcatcgggagaggaattggccgccgccgacggcgtcggcccgaccatcgcggccgcc
gtggcggagtggttcaccgtcgactggcaccgcgccgtggtggcgaagtggcgggccgcg
ggcgtgcggatggaggacgaacgcgacgagtccatcgagcgcaacttggaaggcttgtcc
atcgtggtgaccggttcgctgcagggcttcacccgcgacggcgccaaagaggcgatcctg
aggcgcggcgggaaggccgcgagttcggtttcgaagaagaccgcgttcgtggtggtcggg
gacgcgcccggctccaaggccgcgaaggcggaggaactcggcgtgccgatcctggacgag
gagggtttccagcggctgctggcgggcgggcccgatgcggtcgcgccggagacggcggcg
gaggacgccgacgccgaggagtga
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