KEGG   PATHWAY: nsr02010
Entry
nsr02010                    Pathway                                
Name
ABC transporters - Nocardia seriolae
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
nsr02010  ABC transporters
nsr02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Nocardia seriolae [GN:nsr]
Gene
NS506_00043  [KO:K02067]
NS506_00044  [KO:K02067]
NS506_00045  [KO:K02067]
NS506_00046  [KO:K02067]
NS506_00047  [KO:K02067]
NS506_00048  [KO:K02067]
NS506_00049  [KO:K02066]
NS506_00050  [KO:K02066]
NS506_00051  [KO:K02065]
NS506_00235  [KO:K11959]
NS506_00236  [KO:K11960]
NS506_00237  [KO:K11961]
NS506_00238  [KO:K11962]
NS506_00239  [KO:K11963]
NS506_00382  [KO:K15583 K10823]
NS506_00383  [KO:K15582]
NS506_00384  [KO:K15581]
NS506_00385  [KO:K15580]
NS506_00462  [KO:K10112] [EC:7.5.2.-]
NS506_00472  [KO:K10236]
NS506_00473  [KO:K10237]
NS506_00474  [KO:K10238]
NS506_00575  [KO:K02067]
NS506_00576  [KO:K02067]
NS506_00577  [KO:K02067]
NS506_00578  [KO:K02067]
NS506_00579  [KO:K02067]
NS506_00580  [KO:K02067]
NS506_00581  [KO:K02066]
NS506_00582  [KO:K02066]
NS506_00588  [KO:K05814]
NS506_00589  [KO:K05815]
NS506_00590  [KO:K05813]
NS506_00591  afuC; Fe(3+)-transporting ATPase [KO:K05816] [EC:7.6.2.10]
NS506_00607  modC; Molybdate-transporting ATPase [KO:K02017] [EC:7.3.2.5]
NS506_00609  [KO:K02018]
NS506_00610  [KO:K02020]
NS506_00740  [KO:K13889]
NS506_00741  [KO:K13889]
NS506_00742  [KO:K13889]
NS506_00743  [KO:K13892]
NS506_00744  [KO:K13891]
NS506_00745  [KO:K13890]
NS506_00834  [KO:K09691] [EC:7.5.2.14]
NS506_00835  [KO:K09690]
NS506_00884  [KO:K18887]
NS506_00885  [KO:K18888]
NS506_01318  [KO:K02066]
NS506_01319  [KO:K02066]
NS506_01320  [KO:K02067]
NS506_01321  [KO:K02067]
NS506_01322  [KO:K02067]
NS506_01323  [KO:K02067]
NS506_01324  [KO:K02067]
NS506_01325  [KO:K02067]
NS506_01363  [KO:K11959]
NS506_01388  [KO:K16013]
NS506_01389  [KO:K16012]
NS506_01399  [KO:K02040]
NS506_01400  [KO:K02037]
NS506_01401  [KO:K02038]
NS506_01402  pstB; Phosphate-transporting ATPase [KO:K02036] [EC:7.3.2.1]
NS506_01440  [KO:K09814] [EC:7.6.2.-]
NS506_01441  [KO:K09813]
NS506_01986  [KO:K05846]
NS506_01987  [KO:K05846]
NS506_01988  [KO:K05847] [EC:7.6.2.9]
NS506_01989  [KO:K05845]
NS506_01990  [KO:K05845]
NS506_02541  [KO:K09812]
NS506_02542  [KO:K09811]
NS506_02906  bioM; Putative ABC transporter ATP-binding protein [KO:K16784] [EC:7.6.2.-]
NS506_02907  [KO:K03523]
NS506_02908  [KO:K16783]
NS506_03118  [KO:K10537]
NS506_03259  [KO:K02072]
NS506_03396  [KO:K15553]
NS506_03397  [KO:K15554]
NS506_03398  [KO:K15555] [EC:7.6.2.14]
NS506_03519  [KO:K02424]
NS506_03520  [KO:K10009]
NS506_03563  [KO:K01999]
NS506_03565  [KO:K01997]
NS506_03566  [KO:K01998]
NS506_03567  [KO:K01995 K01996]
NS506_03608  [KO:K06160]
NS506_03692  [KO:K02067]
NS506_03693  [KO:K02067]
NS506_03694  [KO:K02067]
NS506_03695  [KO:K02067]
NS506_03696  [KO:K02067]
NS506_03697  [KO:K02067]
NS506_03698  [KO:K02066]
NS506_03699  [KO:K02066]
NS506_03773  [KO:K11069]
NS506_03774  [KO:K11072] [EC:7.6.2.11]
NS506_03775  [KO:K11071]
NS506_03776  [KO:K11070]
NS506_03879  [KO:K02012]
NS506_03943  [KO:K10440]
NS506_03944  [KO:K10439]
NS506_04010  [KO:K02067]
NS506_04424  [KO:K02067]
NS506_04425  [KO:K02067]
NS506_04426  [KO:K02067]
NS506_04427  [KO:K02067]
NS506_04428  [KO:K02067]
NS506_04429  [KO:K02067]
NS506_04430  [KO:K02066]
NS506_04431  [KO:K02066]
NS506_04866  [KO:K15552]
NS506_04867  [KO:K15551]
NS506_04868  [KO:K10831] [EC:7.6.2.7]
NS506_05243  [KO:K23186]
NS506_05244  [KO:K23187]
NS506_05245  [KO:K23188]
NS506_05303  [KO:K05815]
NS506_05304  [KO:K05814]
NS506_05306  [KO:K05813]
NS506_05307  [KO:K05816] [EC:7.6.2.10]
NS506_05415  [KO:K02067]
NS506_05416  [KO:K02067]
NS506_05417  [KO:K02067]
NS506_05418  [KO:K02067]
NS506_05419  [KO:K02067]
NS506_05420  [KO:K02067]
NS506_05421  [KO:K02066]
NS506_05422  [KO:K02066]
NS506_05775  [KO:K02067]
NS506_05776  [KO:K02067]
NS506_05777  [KO:K02067]
NS506_05778  [KO:K02067]
NS506_05779  [KO:K02067]
NS506_05780  [KO:K02067]
NS506_05781  [KO:K02066]
NS506_05782  [KO:K02066]
NS506_06096  [KO:K10008] [EC:7.4.2.1]
NS506_06097  [KO:K10005]
NS506_06098  [KO:K10006]
NS506_06099  [KO:K10007]
NS506_06117  [KO:K10544]
NS506_06118  [KO:K10545] [EC:7.5.2.10]
NS506_06119  [KO:K10543]
NS506_06732  [KO:K02045] [EC:7.3.2.3]
NS506_06733  [KO:K02047]
NS506_06734  [KO:K02046]
NS506_06735  [KO:K23163]
NS506_06844  [KO:K10005]
NS506_06984  [KO:K15553]
NS506_06985  [KO:K15555] [EC:7.6.2.14]
NS506_06986  [KO:K15554]
NS506_07126  [KO:K02067]
NS506_07127  [KO:K02067]
NS506_07128  [KO:K02067]
NS506_07129  [KO:K02067]
NS506_07130  [KO:K02067]
NS506_07131  [KO:K02067]
NS506_07132  [KO:K02066]
NS506_07133  [KO:K02066]
NS506_07223  malK; sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K02010] [EC:7.2.2.7]
NS506_07224  [KO:K02011]
NS506_07225  [KO:K02012]
NS506_07596  [KO:K25286]
NS506_07612  [KO:K14699] [EC:7.-.-.-]
NS506_07613  [KO:K14698] [EC:7.-.-.-]
NS506_07743  [KO:K16785]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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