Nocardia seriolae: NS506_02278
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Entry
NS506_02278 CDS
T04599
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nsr
Nocardia seriolae
Pathway
nsr03030
DNA replication
nsr03410
Base excision repair
nsr03420
Nucleotide excision repair
nsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NS506_02278 (ligA)
03410 Base excision repair
NS506_02278 (ligA)
03420 Nucleotide excision repair
NS506_02278 (ligA)
03430 Mismatch repair
NS506_02278 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nsr03032
]
NS506_02278 (ligA)
03400 DNA repair and recombination proteins [BR:
nsr03400
]
NS506_02278 (ligA)
Enzymes [BR:
nsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NS506_02278 (ligA)
DNA replication proteins [BR:
nsr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NS506_02278 (ligA)
DNA repair and recombination proteins [BR:
nsr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NS506_02278 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NS506_02278 (ligA)
MMR (mismatch excision repair)
DNA ligase
NS506_02278 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NS506_02278 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
DNA_ligase_ZBD
BRCT
IclR_C
HHH
RNA_ligase
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
APA96344
UniProt:
A0ABC8AQ43
LinkDB
All DBs
Position
2415240..2417183
Genome browser
AA seq
647 aa
AA seq
DB search
MALREAYYQGSPLVADAEYDAVEDELRGLIEAHPELTPDPNPLDQVGAPGVLHAPVRHSR
PMLSLEKATTAEQVAAFFARFPGQSVVVMPKLDGLSLALVYEDGRFVRAVTRGDGTTGDD
VTLLVAALVDGIPEGIEVPGRVEVRGEAVMLRSTFAAYNTAHPDKPLINPRNAAAGTLRA
KDPATVAERRLQFFGFDLDAEGGVADLEDGLRALGIAGAQMRHCEDAEQAQTAIGAIERG
RDALDYDLDGAVLRLADRDAYAAAGTRSSSPRGALAFKFAAEEKTTLLADVVWDVGKTGK
IVPVAWLDPVFVGGTTVTKATLASQEVIRARDIKIGDTVLVRRAGDVIPFVAGVLDASRR
TGEEREIVPPTVCPSCGQPVTEQGNSRELFCTNVSCPAQTVRRLIHWASRAAADIDAIGP
VWIERLAEAGILENPSDFYTLTKDRLLEFDRVGEVSAARMIDSIDVSRRVCLRRALIGLA
IPMASDGTAARLARAGFATLEEVADAGEERLVAVDDIGPKVAASLVAHLTRLRPELERLR
EFGVSLDVREEDLPPVVAAGAPLAGKTVVITGAISDPRSGEKVARPTFQRLCAKAGATAA
SSVSANTDLLITGAGVGDSKLTKAEKLGVEVVDQGEIWNLLIAANVV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
gtggcgctgcgcgaggcctactatcagggctcgccgctggtcgccgacgccgagtacgac
gcggtcgaggacgagttgcgggggttgatcgaggcgcatccagagctcacgccggatccg
aatccgctggatcaggtcggcgcgcccggggtgctgcacgcgcccgtgcggcattcgcgg
ccgatgctctcgctggagaaggcgaccacggccgagcaggtcgccgccttcttcgcccgg
ttcccggggcaatcggtggtggtgatgccgaagctcgatggactgtcgctggcactcgtc
tatgaggacgggcggttcgtacgggcggtgacgcggggcgacggcaccaccggtgatgac
gtgaccctgctggtcgcggccttggtggacgggattcccgaggggatcgaggtgcccgga
cgcgtggaggtccggggtgaggccgtgatgctgcggtccaccttcgccgcctacaacacc
gcgcatccggacaagccgctgatcaatccgcgcaatgcggcggcgggcacgctgcgggcg
aaggatccggccaccgtcgccgaacggcgcttgcagttcttcgggttcgacctggacgcc
gagggcggcgtcgccgacctcgaggacgggctgcgggcactcgggatcgcgggcgcgcag
atgcggcactgcgaggatgccgagcaggcgcagaccgcgatcggtgccatcgagcgcggc
cgcgacgcactggactacgacctcgacggcgcggtgctgcggctggcggaccgagatgcc
tacgcggcggcgggaactcgatcgagctccccgcgcggtgccctggcgttcaagttcgcc
gccgaggagaagaccacgctgctcgccgatgtggtctgggacgtcggcaagaccggcaag
atcgtgccggtcgcctggctggacccggtcttcgtgggcggcaccacggtcaccaaggcc
acgctggccagccaggaggtgatccgcgcccgcgacatcaagatcggtgacacggtgctg
gtccgccgcgcgggtgacgtgatccccttcgtggcgggcgtgctcgacgcctcccgacgc
acgggcgaagagcgcgagatcgtcccgccgaccgtctgcccctcctgcgggcaaccggtg
accgaacagggcaacagccgagagctgttctgcaccaacgtttcctgcccggcccagacc
gtgcgcaggctcatccactgggcgtcgcgcgccgcggcggacatcgacgccatcgggccg
gtgtggatcgagcgcctcgccgaggccgggatcctggagaacccgtcggacttctacacc
ctgaccaaggatcgcctgctcgaattcgaccgcgtcggtgaggtttccgccgcccgcatg
atcgactcgatcgacgtcagccgccgggtctgcctgcgtcgcgcgctgatcggcctggcc
atccccatggcctccgacggcaccgccgcccgcctggcccgcgcgggcttcgccaccctc
gaggaggtcgccgacgcgggcgaggaacggctggtggcggtggacgatatcgggccgaag
gtcgccgcctcgctggtcgcccacctcacccggctgcgcccggaactggaacgactgcgc
gaattcggtgtctccctggatgttcgggaggaggacctacccccggtcgtcgccgcgggt
gcgccgctggcgggcaagacggtggtgatcaccggcgcgatcagtgacccgcgctcgggg
gagaaggtcgcccgcccgaccttccagcgcctgtgcgcgaaggcgggcgcgaccgccgcg
tcctcggtgtcggcgaataccgatctgctcatcaccggcgccggagtcggcgacagcaaa
ctgaccaaggcggagaagctcggcgtcgaggtcgtcgaccagggcgagatctggaacctg
ctgatcgccgccaacgtcgtgtga
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