Nicotiana sylvestris (wood tobacco): 104211671
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Entry
104211671 CDS
T05026
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104211671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104211671
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104211671
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
AAA_23
Arf
AAA
Zeta_toxin
ORC-CDC6-like
AAA_30
AAA_28
Motif
Other DBs
NCBI-GeneID:
104211671
NCBI-ProteinID:
XP_009759067
UniProt:
A0A1U7UY28
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All DBs
Position
1:complement(131917539..131921517)
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AA seq
328 aa
AA seq
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MAVKEDRKPSVEINKLKFTYPGIDGHPPPGSTPLIEDFSLTLYPGDRCLLVGSNGAGKTT
ILKILGGKHMVEPDMVRVLGRSAFHDTALTASGDLSYLGGEWRREVAFAGFEVPIQMDIS
AEKMIFGVPGTDPQRRDELIKVLGIDLSWRMHKASDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLKFLSKECEERGATIIYATHIFDGLENWPSHMLYVAHGKLQLAMPMDK
VKEISNMSLMRTVESWLRKERDEKRKRRKERKAKGLPEYGKQVEGSRVVGDPARAAARPL
NNGWAGGRLNSTIAGEENFVLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggctgtaaaggaagacaggaagccatcagttgagatcaacaagctcaaattcacctac
cctggtatcgatggccatccgccccctggatctacacccttaatcgaagatttctcactt
accctctatcctggtgaccgatgccttcttgttggatccaatggcgcaggaaagactaca
attctgaagatattgggaggaaagcacatggtagaaccagacatggtcagagtgcttgga
agatctgcatttcatgacactgctttaactgcttctggagacctcagctatcttggtgga
gagtggaggagagaagttgcatttgctggatttgaggtgcctattcaaatggatatttct
gcggagaaaatgatttttggggttccaggaactgacccacaaagacgagatgaattaatt
aaggttctaggtattgatctatcctggagaatgcataaagcatctgatgggcaaagaaga
agagtgcagatctgtatgggtctcctgaaaccattcaaggttcttcttcttgatgagatt
acagttgacctagatgttcttgcgagggctgatcttttgaaatttctgagcaaagaatgt
gaagagcgaggcgctactataatttatgcaacacatatttttgatggtcttgagaattgg
ccttctcatatgctatatgtggctcatgggaagttgcaattagcaatgccaatggacaag
gtgaaggagatcagcaatatgtcattaatgaggacagtagagagttggctgaggaaagaa
agagatgagaagaggaaaagaaggaaagagagaaaggcgaagggccttccagagtatgga
aaacaagttgagggcagtcgagtggttggggatccagctcgtgctgctgctcgtccatta
aacaacggttgggctggtggaaggctaaattctactattgctggtgaagaaaattttgtc
ttaagctcgaaccgtgttctaagataa
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