Nicotiana sylvestris (wood tobacco): 104212536
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Entry
104212536 CDS
T05026
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104212536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104212536
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104212536
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Coilin_N
Motif
Other DBs
NCBI-GeneID:
104212536
NCBI-ProteinID:
XP_070016178
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Position
10:107328996..107362802
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AA seq
817 aa
AA seq
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MGIPAFYRWLLERYPQSVVEVNEETPAVINGVTVPIDTSDPNPNGIEFDNLYLDMNGIIH
PCFHPEGLPAPETHEEVFKAVFKYIDRIFSIVRPRKLLYMAIDGVAPRAKMNQQRARRFR
AAKDAGDEASDTGRIRRNDETEREDLSTKKLDSNVITPGTKFMELLSSALQYYIRLKVNV
DSGWQGIKVILSDASVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALASH
EVHFSILREDVRKDKSKYKGQQNRQDMYRQQAGRHSKKGEGGGKDLENLISEQKFQFLKV
WVLRDYLGYELQIPDPTVKLDLERLIDDFVFMCLFVGNDFLPHVPSLEISEGAIDLLIDV
YKKEFVNMGGYLTNSCQVNLERAGHFIQAIGSYENAVFRKRIQVQKHWGIHMQRPTLNLA
VQKKQDKSNHVQAKTLSVVDKVKLGEEGWKERYYLEKFDVQTEEDCVKIQRDVVLKYVEG
ICWVMHYYYQGVCSWQWFYPYHYAPFASDFHDLDRLKIHFTIGKPFKPFDQLMGVLPAAS
AQALPVSYRKLMTDPLSPILDFYPSDFELDMNGKRHAWQAVCKLPFIEESRLLSEIANVE
DTLTVDEKHRNSLGLDMLFVYLSHPLATKILAFCARNKDNPKLPKAKVKRKINPEFSHGM
NGFIYLSDKPVCRVEVYPPVEDMDVITDNKVISVFYKVPSFHPHIPRPPKGVTMPRKVIS
KDGVHPQPLLWHEKTAVAEHRYSRRCIPHNSVSGPRLAKLAHQLVSENCFLKHQVNGDGG
NDSHSKKRKKKRSADRKKRTGAERKKRKKQRQDTVVC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacctgcattctatcgttggttactggagcgttatccacagtctgttgttgag
gttaacgaagaaaccccagccgtcattaatggggttactgtcccaattgacactagcgac
cctaatcccaacggcattgaattcgataatctgtatttggatatgaacggaatcattcac
ccttgttttcatccagaaggcctgcctgccccggagacacacgaggaagtctttaaagcg
gttttcaagtacattgatagaatattttcaattgttaggcctcgcaagcttttatacatg
gcgattgatggtgttgcaccacgtgccaaaatgaatcaacaacgtgcaagacgtttcaga
gctgctaaagatgctggtgatgaagcctctgatacagggagaataagaaggaatgatgaa
acagaacgggaagatttaagtactaaaaagttggattcaaatgttattacacctggaacg
aaattcatggaactgctgtcatctgcacttcaatactatatacgtttgaaagtgaatgta
gactctggttggcagggaatcaaggttattctctctgatgctagtgtgcctggtgaaggg
gagcataagataatgtcttatattcgcttgcaaaggaatcttccaggatttgatcctaat
acacgacattgcttgtatggtttggacgcagacttgataatgctggcattggcgtcacat
gaagttcacttttcaattctaagggaggatgtccgcaaagataaatcaaagtataaaggt
caacagaataggcaagatatgtatagacaacaagcaggtaggcactcaaaaaaaggggaa
ggaggcggcaaggacttagagaacttaatatcagaacagaagtttcagtttcttaaagta
tgggtactcagagattatttgggatacgaacttcaaattccagatccaactgtcaaacta
gacctggagcgactgatagatgattttgttttcatgtgtttatttgttggaaatgatttt
cttccccacgtgccatctttggagatatcagagggagccattgacttactgattgatgtc
tacaagaaggaatttgtcaatatgggtggctaccttactaattcttgccaggttaatttg
gagagggcggggcactttatacaagccattggttcttatgagaatgctgtctttaggaag
cgtatccaggtacagaagcattgggggatacacatgcaacgccctacattaaatttggct
gttcagaagaagcaggacaaaagtaaccatgtacaagccaagaccctttctgtggttgat
aaggttaaattaggagaagagggctggaaagaaagatactatttggaaaaatttgatgtt
caaaccgaagaagattgcgtcaaaattcaaagggatgtggtcttgaaatatgttgaagga
atatgttgggtcatgcattattactaccaaggagtgtgctcctggcaatggttttatcct
tatcactatgctccattcgcatctgattttcatgatcttgaccgattgaaaatccacttc
acaattggcaagcccttcaagccttttgatcagctaatgggtgtccttccagctgcaagt
gcacaagcacttcccgtttcttacaggaagttgatgacagatccattgtcccctatttta
gacttctatcctagtgattttgagcttgatatgaatgggaagaggcatgcttggcaggct
gtttgtaagctgccatttattgaagagagccgtcttctatctgagattgcaaatgttgaa
gatactttaacggttgacgaaaagcacagaaacagtctcggccttgatatgttgtttgtt
tacttgtcacatcctctagcaacgaagatccttgctttttgtgcaaggaacaaggacaat
ccaaagttgccaaaggctaaagtgaaaaggaaaatcaatcccgagttcagtcatggaatg
aatggattcatatatctttctgataagcctgtatgtcgtgttgaggtctatccacccgtt
gaggacatggatgtgataacagataataaagtcatatctgtgttttataaagtcccttct
ttccatcctcacattcctaggccaccaaaaggagtaacaatgcctagaaaggttatctcc
aaggatggagtccaccctcaacctttattatggcacgagaagacagctgttgctgaacac
agatattctagaaggtgcataccccacaattctgtatcaggacctcgtttggcaaaattg
gctcatcagcttgtatcagaaaactgtttcctgaagcaccaagtgaatggagatggtggc
aatgatagccacagtaagaaacgaaagaagaagcgtagtgctgatagaaagaagcgtacc
ggtgctgaaagaaagaagcggaagaagcaaagacaagatacagtagtgtgctag
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