Nicotiana sylvestris (wood tobacco): 104244210
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Entry
104244210 CDS
T05026
Name
(RefSeq) sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104244210
09123 Folding, sorting and degradation
03018 RNA degradation
104244210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104244210
03041 Spliceosome [BR:
nsy03041
]
104244210
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104244210
mRNA degradation factors
5'-3' decay
Lsm complex
104244210
Spliceosome [BR:
nsy03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104244210
Complex C
U2 snRNP components
104244210
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
104244210
NCBI-ProteinID:
XP_009797884
UniProt:
A0A1U7YF68
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Position
5:complement(77251858..77260117)
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AA seq
97 aa
AA seq
DB search
MGSEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTIE
IDDETYEEIVRTTRRTIPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtgaagaagagagcacagtgaaagagccgttagatctcatcagactcagcctt
gatgaaagaatctacgtcaaactccgttcagaccgagaactccgtggcaaacttcacgct
tatgatcagcatcttaatatgattcttggtgatgttgaagaaattgtgaccacaattgag
attgatgatgaaacatatgaggaaatagttcggactacaagacggaccatccctttccta
tttgttcgtggggatggtgtaatactggtgtctcctcctctgcggactgcctga
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