KEGG   Nicotiana sylvestris (wood tobacco): 104244210
Entry
104244210         CDS       T05026                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
nsy  Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018  RNA degradation
nsy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nsy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104244210
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104244210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nsy03019]
    104244210
   03041 Spliceosome [BR:nsy03041]
    104244210
Messenger RNA biogenesis [BR:nsy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104244210
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     104244210
Spliceosome [BR:nsy03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    104244210
 Complex C
  U2 snRNP components
    104244210
SSDB
Motif
Pfam: LSM TIG_SUH Glutaredoxin
Other DBs
NCBI-GeneID: 104244210
NCBI-ProteinID: XP_009797884
UniProt: A0A1U7YF68
LinkDB
Position
5:complement(77251858..77260117)
AA seq 97 aa
MGSEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTIE
IDDETYEEIVRTTRRTIPFLFVRGDGVILVSPPLRTA
NT seq 294 nt   +upstreamnt  +downstreamnt
atgggaagtgaagaagagagcacagtgaaagagccgttagatctcatcagactcagcctt
gatgaaagaatctacgtcaaactccgttcagaccgagaactccgtggcaaacttcacgct
tatgatcagcatcttaatatgattcttggtgatgttgaagaaattgtgaccacaattgag
attgatgatgaaacatatgaggaaatagttcggactacaagacggaccatccctttccta
tttgttcgtggggatggtgtaatactggtgtctcctcctctgcggactgcctga

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