Nicotiana sylvestris (wood tobacco): 104246373
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Entry
104246373 CDS
T05026
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104246373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nsy03019
]
104246373
Messenger RNA biogenesis [BR:
nsy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104246373
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
AAA_29
ORC-CDC6-like
AAA_15
AAA_28
SMC_N
NACHT
AAA
AAA_23
AAA_22
AAA_18
AAA_5
AAA_25
AAA_24
AAA_30
AAA_16
AAA_33
SRP54
AAA_7
PduV-EutP
AAA_14
Zeta_toxin
FtsK_SpoIIIE
DUF3584
Arf
AAA_13
Motif
Other DBs
NCBI-GeneID:
104246373
NCBI-ProteinID:
XP_009800482
UniProt:
A0A1U7Y8N8
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Position
9:96602047..96604829
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AA seq
286 aa
AA seq
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MEGKSSSIQVNGMQFSYDFQSPIFFDFSLKISPGSRCLLVGANGSGKTTLLRILAGKHMV
GGRDVVKVLNFSAFHDTHLVCDGDLAYLGESWSKNVGSAGEIPLQGDFSAEHMIFGVEGV
DPVRREKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEVTVDLDVVARMD
LLDFFKEECEQRGATIVYATHIFDGLESWATDLVYIQDGVLKRSEKLPELPELKSSPNLL
SVVENWLRSETTIEKKKPVIAPPKVQKSSPFGSSPFQSSRHMAYFR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggagggaaaatcaagcagtattcaagtcaatggaatgcaattctcttacgatttccaa
agtcctatctttttcgatttcagcctaaagatttctcccggatctcgatgtctccttgtc
ggtgcaaatggatccggaaagacgacactgttgaggatattggcaggaaagcatatggtg
ggaggaagagatgtagtgaaggtgctgaatttttcggcttttcatgacacccacctcgtc
tgtgatggtgatttggcatacctaggagagtcctggagcaaaaatgttggctctgctgga
gagattccacttcagggagatttttcagcagaacatatgatatttggagtcgaaggagtc
gatccagttcggcgagagaagttgattgagctgctggatatcgatctgcaatggcgtatg
cacaaggtatctgatggtcagagacgcagagttcagatctgcatgggtctccttcacccc
tataaggttcttttgctggatgaggttacagttgatttagatgttgtcgcaaggatggat
ttgttggacttctttaaggaagaatgcgaacagagaggagctactattgtctatgcaaca
catatatttgatggactggagtcctgggcaacagatcttgtttacatccaagatggagtt
ctgaagaggtctgagaaattacctgagcttcccgagttgaagtcttcccccaatttgctt
tcagtagttgagaactggttgaggtctgagaccacgattgagaaaaagaagccagttatc
gccccaccaaaagttcagaaatcctctccttttggctcttctccgtttcagtcatctaga
catatggcatatttccgctga
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