Nicotiana tabacum (common tobacco): 107759403
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Entry
107759403 CDS
T04643
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107759403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107759403
Enzymes [BR:
nta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107759403
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107759403
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107759403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
107759403
NCBI-ProteinID:
XP_016432829
UniProt:
A0A1S3WYW3
LinkDB
All DBs
Position
Un
AA seq
595 aa
AA seq
DB search
LPSDIPIVGCELTPYVLLRRPNKEVISEDVPESAPVDGYFLRYKWYRIQSDKKVAICSIH
PSEQATLQCLGCVKAKIPVTKSYHCSPKCFSDAWQHHRVLHERAASAVNENGNEEEEIFG
RFNSTGSGVINSSLSSSQSSGSLANGTTTLYPAAVTQRNGGETWFEVGRSKTYTPTADDI
GHALKFECVVVDAETKLHIGPASTLLTSRVIPAPCPTPRRMFSVSGVDIPGHLDLDGRLS
SSGTFTVLSYNILSEAYATSELYSYCPSWALAWTYRRQNLLREIVGYRADIVCLQEVQSN
HFEEFFAPELDKHGYQALFKRKTAEVFNGSINNIDGCATFFRRDRFSHVKKYEVEFNKAA
QSLTDAVVPIAQKKTALNRLVKDNVALIVVLEAKFSNQGVDNPGKRQLVCVANTHVNVQQ
ELRDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHTLLALGKVDPMHPDLTV
DPLGILRPPTKLTHQLPLVSAYSSFARMGVGLGLEQQRRRMDPNTNEPLFTNCTRDFIGT
HDYIFYSADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRTRR
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
ctcccgtccgatattccgatcgtaggctgtgagctcactccttatgtgcttttacgtcgc
ccgaataaggaagtcatttctgaggatgtccctgagtctgcccctgttgatggctatttc
ttgagatacaagtggtatcgtatacaaagtgataagaaagtcgccatctgtagtatccat
ccatccgagcaagccacattgcagtgccttgggtgtgtgaaggccaaaatccctgtcact
aagagttaccattgctcacctaaatgtttctcagatgcatggcaacatcatcgtgttctg
catgaacgtgccgctagtgctgtgaatgaaaatggaaatgaggaggaagaaatatttgga
cgatttaatagtactggatctggtgttataaattcaagcttgtcttcttcgcaatcaagt
ggcagcttggcaaatggaaccacaactttataccctgcagcagtaacccagagaaatggc
ggcgaaacctggtttgaagttggacggtctaaaacatatacaccaaccgcagatgatatt
ggtcacgcacttaaatttgaatgtgttgttgtagatgcagaaacaaaattacatattgga
cctgctagtaccctattgacgtcccgggtgattccagctccatgtccaactccacgtcgc
atgttttcagttagtggggttgatattcccggacatctggatttagatggtcgattgtct
tcttcaggaactttcactgtgctttcctacaatattctgtctgaagcatatgcgacaagc
gaattatacagttattgcccctcttgggctcttgcttggacatatcgtagacaaaatcta
ttgcgtgaaatagtgggctaccgtgcagacattgtttgtcttcaagaggttcaaagtaat
cattttgaggaattctttgctcctgagctggataaacacggttatcaagctctgtttaaa
agaaaaacagcagaggtgtttaatgggagtattaacaatattgatggttgtgctacattt
ttccgccgagatagattctcacatgttaaaaaatatgaggtcgagttcaataaagctgca
caatctttgactgatgctgtggttcccattgcccaaaagaagactgcattaaatcgtttg
gttaaggataatgttgcacttatagtggttttggaagcaaagttcagtaaccagggggtt
gacaaccctgggaaacgtcaactagtttgtgtggccaatacacatgtaaacgttcagcaa
gaattaagggatgtcaaactttggcaggttcacacacttcttaaaggacttgaaaaaatt
gctgccagtgctgacatcccaatgctggtctgtggtgattttaattcggtgcctggaagt
gctcctcatacacttcttgctttggggaaagttgatccaatgcatccagatttaacagtg
gatcctcttggtattttgcgtccacctacaaagttaacacaccagctgccattggttagt
gcgtattcatcttttgccagaatgggggtgggacttggactagagcagcaaaggaggagg
atggatcctaataccaatgagcccttgtttacaaactgcaccagagattttattggcact
catgattatatattctactcagctgactcattaactgttgaatctttattggagctcttg
gatgaagaaagcttgagaaaagacactgcacttccttctccagagtggtcatctgatcat
atagcactcttagctgagtttcgctgcaagcctagaactagacgctga
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