Nicotiana tabacum (common tobacco): 107759510
Help
Entry
107759510 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107759510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107759510
03012 Translation factors [BR:
nta03012
]
107759510
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107759510
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107759510
Translation factors [BR:
nta03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107759510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
Dicer_dimer
nSTAND3
AAA_19
AAA_22
ATPase
TFIIA
NPHP3_N
NACHT
AAA_11
PhoH
ABC_tran
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
107759510
NCBI-ProteinID:
XP_016432957
UniProt:
A0A1S3WZ94
LinkDB
All DBs
Position
Un
AA seq
1181 aa
AA seq
DB search
MSLYSFQFFSHYRTLIKPLSIPPPSWSLTMKDRPPPPSSVYVPPHQRLLRSVITAVPPQS
GGFRSTAIDPKPIPNAQQQIQQPQQMRVLQQKRTSRFDEVLLSQEVSACDIDLTPYQGAA
ISDNTEAWKSKLTALLRDKDKQEVLSREKKDRRDYEQIAALASKMGLYSNLYSKVVVVSK
LPLPNYRFDLDDKRPQREVILPPGLPRRIDTFLGEYLSHKPMSVAVLSRSSSNGSITTDE
GLFEQPELLPQSKASMENILWRRSMQMRAEQQTWQESPEGRKMLEFRSSLPAYKEKEAIL
SAISQNQVVIISGETGCGKTTQIPQFILESEIESAHGAMCSIICTQPRRISAMTVSERIA
AERGELLGETVGYKVRLEGVKGRDTHLLFCTTGILLRRLLIDRNLKGITHVIVDEIHERG
INEDFLLIVLKDLIPRRPELRLILMSATLDAELFSSYFGGAPLVHIPGFTYPVRTHFLEN
ILEMSGYRLTPDNQIDDYGQERTWKMNKQAPRKRKSQIASAVEDALRAADFKEFSPVTQE
SLSCWNPDCIGFNLIEHILCHICENERPGAVLVFMTGWDDINSLKDKLQCHPILGNTSRV
LLLACHGSMASTEQRLIFDKPEDGVRKIVLATNIAETSITIDDVVYVIDCGKAKETSYDA
LNNTPCLLPTWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSL
CLQIKSLKLGSISEFLSRALQSPELLAVQKAIEYLKIIGALDESENLTVLGRYLTMLPME
PKLGKMLILGATLNCLEPILTIVAGLSVRDPFLTPLDKKDLADAAKAHFSRDYSDHLALV
RAYEGWRDAERDLAGYEYCWKNFLSAQSMKAIDSLRREFYSLLKDTGLVDSNNTIYNSWS
YDEHLLRGIICYGLYPGICSVLHNEKSFSLKTMEDGQVLLHSNSINARDSRIPYPWLIFN
EKIKVNSVFLRDSTAISDSVLLLFGGTISKGEVDGHLKMLGGYLEFFMSPTIAEMYRSLR
RELDELIHTKLLNPRMDVHSYHELLSAIRLLISEDQCGGRFVFSRQVLLTSKPCAAAAPP
APMSRTESGPGGENSKSQLQTLLNRAGYATPTYKTRQLNNNQFQATVEFNGMQIMGRPCN
NKKQAEKDAAAEALQWLLEGHRAGPDYIERMSLILKKSKTA
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatattctttccaatttttctcacattacagaacccttattaaacccttgagc
attccaccaccgtcgtggtcgttgacgatgaaggaccggccgccgccgccgtcatccgtt
tacgtacctccacatcaacgcctcctccgttcagtaatcactgctgttccgccacagtcc
ggcggcttccgttctacagcaatcgatcccaaacctattccgaacgctcagcagcaaatt
cagcagccacaacaaatgcgagtgctgcaacagaagagaacttcacgatttgatgaggtt
ttactttctcaggaagtttccgcttgtgatattgaccttacaccctatcagggtgctgcc
atatctgacaacactgaagcatggaaatcgaagctcactgctctgttacgcgacaaggat
aaacaagaggtgctctcaagggagaaaaaggataggcgtgattatgagcaaatagcagct
ttagcgagcaaaatgggtttatatagcaacctatattcaaaagtagttgttgtcagcaag
cttccattaccaaactacaggtttgatttggatgataagcgtcctcagagagaggtgatc
ttgcctccggggttgccaagacgaatagatacttttcttggagaatacttgtctcataag
ccaatgagcgtggctgtactttcacgatcaagcagtaatggtagcataactaccgatgag
ggtctatttgagcagccagagttactccctcaaagtaaggcttccatggagaacatcctt
tggcgtaggagcatgcaaatgcgagctgagcaacaaacttggcaggaatcaccagaaggt
aggaagatgctggaatttcgtagtagtctacctgcatataaggaaaaagaagcaatatta
agtgccatttcacaaaaccaggtggttattatctcaggtgaaactggctgtgggaagacc
acacagattccccaatttattttagagtctgaaattgagtctgctcacggagccatgtgc
agtatcatatgtactcagccaagaagaatatctgctatgactgtatctgaaagaattgct
gcagagagaggggagttgttgggtgaaacagttggatataaagtgaggctagaaggtgtt
aaagggagggatactcacctcctcttctgtaccactggtatcttgttgagaagactacta
attgacagaaatctgaagggcatcacacatgtaattgtggacgagattcatgaacgtgga
ataaatgaagattttctgctaatagttctaaaggatttaatccctcgccggcctgagtta
aggttgattttgatgagtgccaccttagatgcagagcttttctcttcatactttggtggg
gctccgctggtccacattccgggatttacatatcccgttcgcactcatttcctcgaaaat
attctggagatgtcgggatacagattgacgccagacaatcagattgatgattatggtcag
gagagaacgtggaaaatgaacaagcaagctccaagaaaaaggaaaagccagattgcttct
gctgttgaggatgccctcagagctgctgatttcaaagaatttagccctgtgacacaggag
tctttgtcttgttggaatcctgattgtataggcttcaatcttatagaacatattctatgc
catatttgtgaaaatgaaaggcctggtgctgttttagtttttatgactggttgggatgat
ataaattctctgaaggataagctacaatgtcatcctatcttgggaaataccagccgtgtt
ttattgctggcatgccatggttctatggctagtacggagcagaggttaatatttgacaag
cctgaagatggagtgaggaagatagtgttggctacaaatattgctgaaaccagtatcaca
atcgatgacgtagtttatgttattgactgtggcaaggcaaaagagacgtcatatgatgca
cttaataatactccttgtttgcttcctacttggatttcaaaggtttcagctcgacaaaga
aggggaagagccggacgtgttcagcctggagaatgctatcatctctatcccagatgtgtg
tatgatgcttttgctgattatcaattaccagaaattctgaggacccctttgcaatccctt
tgtttgcaaattaaaagtttaaaactcggtagcatctctgagttcctttcaagggctttg
caatcccccgagttattagcggttcaaaaagctattgagtatctgaaaattattggggct
ttagatgagagtgaaaatttgactgttctaggacgttacttaacaatgcttccaatggag
cctaaactcggaaaaatgcttatacttggtgcaactttgaattgtttggagccgatatta
actatcgttgctggtcttagtgtccgagatcccttcttgacaccgcttgacaagaaagat
cttgcggatgctgctaaggctcatttttcacgcgattatagtgaccatcttgctcttgtt
cgagcatatgagggatggagggatgctgaaagagacctagctggatatgagtactgctgg
aagaattttctgtctgcacagtctatgaaagctattgattctcttcgcagggagttttac
tctttgctgaaggatactggtcttgttgacagcaataataccatctataattcttggagt
tacgatgagcacctccttcgaggaattatctgctatgggttgtatcctggaatctgttct
gtcctgcataatgagaagtcattttcgttgaaaacaatggaagatggtcaggtgctttta
cactcgaactccattaatgcccgggactccaggataccatatccctggctgattttcaat
gaaaagatcaaagtaaactctgtctttctccgggattccacagctatctccgactcagtg
ctgctactatttggaggaaccatctcaaaaggggaagtggacggtcacttgaaaatgtta
ggtggatacttagagttctttatgagccctactatagcagaaatgtatagaagtctaaga
agagagcttgatgagttaattcatactaaactcctgaatcctaggatggatgtacatagt
tatcatgaacttctgtcagcaatacggttgcttatctcagaggatcaatgtggtggcaga
tttgtttttagtcgtcaggttttactaacttccaagccatgtgctgcagcagcaccacca
gctccaatgtcaaggacagaaagtggtcctggaggtgaaaattctaagtctcagctacag
acgttgctgaatcgagcagggtatgcaacaccaacgtacaagacaaggcaacttaataac
aatcagtttcaagcaactgtagagttcaacgggatgcagataatgggacggccttgcaac
aacaaaaaacaagctgaaaaagatgcagcagctgaggctctgcaatggttgttggaaggg
caccgtgcaggtcctgattacattgagcggatgtctctgattctgaaaaagagcaagaca
gcatag
DBGET
integrated database retrieval system
