Nicotiana tabacum (common tobacco): 107759702
Help
Entry
107759702 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107759702
09122 Translation
03013 Nucleocytoplasmic transport
107759702
03015 mRNA surveillance pathway
107759702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107759702
03041 Spliceosome [BR:
nta03041
]
107759702
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107759702
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107759702
Spliceosome [BR:
nta03041
]
Complex C
Other components
EJC/TREX
107759702
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107759702
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
107759702
NCBI-ProteinID:
XP_016433190
UniProt:
A0A1S3X077
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGDSKENDAYEEELLDYEEDDEKAPDSISAKVSGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAMV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQTIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLNKLLVECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagactcaaaggagaacgatgcttatgaggaggagcttctcgactacgaagaagat
gacgaaaaagcccctgattccatctccgctaaagttagcggcgagtccgccaagaagggt
tatgttggcattcacagttccggattcagagactttctgctaaagccagagctattgcgg
gctattgtggattcagggtttgagcatccgtctgaagtgcaacatgagtgtattccacaa
gcaatcctaggcatggatgttatttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccatggtt
ctatgtcacacaagggaattggcttatcagatctgtcatgaatttgagaggttcagcacg
tatttgcctgatatcaaggttgctgttttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgccctcatatagttgttggaactcctggaagaatacttgca
ttggctagagacaaggacctgtctttgaggaacgtgaggcattttatactggatgaatgc
gacaaaatgcttgaatcacttgacatgagacgagatgtgcagacaatcttcaagatgact
cctcatgacaagcaagtaatgatgttttcagcaacactcagcaaagagattcgccctgtt
tgcaagaaatttatgcaagatccaatggaaatttatgtagacgacgaggccaagttgacc
cttcatggacttgtacagcactacatcaaattgagcgaaacggagaagaaccggaagctg
aatgacctgctggatgctttggacttcaatcaagttgttatatttgtcaagagcgtgagc
agagcagcacagctgaacaagttgcttgttgagtgcaattttccatctatctgcatccac
tctggcatgactcaggaagagagattgactcgctacaagaatttcaaggaggggcacaag
agaattcttgttgcaactgatttggttggcaggggcattgacattgaaagggttaacatc
gttgttaactatgacatgccagattccgcagacacttatcttcacagagttggtagagct
ggtaggtttggaactaaaggtcttgccatcacatttgtgtcgtctgcatcagattctgat
gttcttaaccaggttcaggagaggttcgaagtggatataaaagagcttccggagcagatt
gatacttctacatacatgccatcatag
DBGET
integrated database retrieval system
